Detailed information NTG0408818

Bioinformatically predicted

Overview

• Name: chiS
• Type: Regulator
• Locus tag: GPY12_RS03135
• Genome accession: NZ_CP046846
• Coordinates: 647584..651117 (-)
• Length: 1177 a.a.
• NCBI ID: WP_199250778.1
• Uniprot ID: -
• Organism: Vibrio mimicus strain F9458
• Function: chitin sensor (predicted from homology) Competence regulation

Genomic Context

Location: 642584..656117

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GPY12_RS03120	-	643049..644074 (-)	1026	WP_000646277.1	ABC transporter permease	-
GPY12_RS03125	-	644077..645063 (-)	987	WP_000540341.1	ABC transporter permease	-
GPY12_RS03130	-	645233..646903 (-)	1671	WP_148545632.1	ABC transporter substrate-binding protein	-
GPY12_RS03135	chiS	647584..651117 (-)	3534	WP_199250778.1	two-component system sensor histidine kinase ChiS	Regulator
GPY12_RS03140	rsmC	651181..652203 (-)	1023	WP_148545628.1	16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC	-
GPY12_RS03145	-	652277..653362 (-)	1086	WP_148545626.1	AI-2E family transporter	-
GPY12_RS03150	-	653399..653554 (+)	156	WP_000187948.1	hypothetical protein	-
GPY12_RS03155	hemL	653600..654898 (-)	1299	WP_148545624.1	glutamate-1-semialdehyde 2,1-aminomutase	-
GPY12_RS03160	erpA	655182..655523 (+)	342	WP_000005742.1	iron-sulfur cluster insertion protein ErpA	-

Sequence

Protein

• Length: 1177 a.a.
• Molecular weight: 133105.12 Da
• Isoelectric Point: 6.5774

>NTDB_id=408818 GPY12_RS03135 WP_199250778.1 647584..651117(-) (chiS) [Vibrio mimicus strain F9458]
MRLCPHFSLDLLVKVKKLVNFVTLGFSYQSPTHAWRSPQSFTKSNALIMFRFYRKQKFKRLQNTLMAAFLALSIIPLTIT
ALFFLHSHSKDLEEQSTSYLVSVRDTKQQQVIDYMMAKESEVMGFVRSELAYASGGRFYGLVNAFQRLDVSIEAAREHAQ
QRYIPGSGDQIKTSVLPQSSSYVGSERYRLLHKRYHWAYLELLKRSDFDDILLVDIEGNVVYSIYKHGNFGTNLLTGKYK
DSSLGSTFKRLEQTVNEQRKTNEDFTPVVISDFVQEDGKQYAWLGAPIIQQGYLHSYAMFRLPSNAITKLIADGSSNPSM
QTILVGQDHRSRTLTSAEVAVEKSKEVVDLALSGKRSVGTYTNTDDEEIIAAYAPINLKSIHWALVVELPEKEAFARVRQ
LEKLFVFAMLTAIVLVVIASHYLSNFITSPLLKLTWAAERVSAGDLDEAMINTERKDEIGRLAVSFERMQRSIREKISLI
KSQNKELENNLLIIRKQNDELQLANKLKDEFLATTSHELRTPLHGMIGIAEALVSGANGPLTAAHKYQLDIIISSGQRLA
TLVDDLLDYHKMRYGALDIQKSAVDLSSATRLVLELSNHLLGKKTLRIINQVSEQPVWVSADPQRLEQVLYNLIGNAIKY
TSEGKIVISATYIDDKVRVQVVDTGQGIPAEQLEQIFEPLIQAGRDASRYRQGAGLGLSISRQLIELMNGTLYVSSQPMV
GTTFSFTLPLATQEEIDQARLTELPHFQAPEILDTELPEQSTLPENEHGPLLLVADDEPVNLRVLDSFLRLEGYRVHTAQ
DGHEVLEAIQREKPELLLLDIMMPGMSGYQVCEKLRQTYDHAELPIIMLTALNQSDDRVRGFEAGANDYLSKPFNKQELA
ARIVAHLTASKAELRRIENAQLQKELKHRAMVEASLLETQGRLLEQLESAPEAILCVKEGNKVRFANEAAARLFRRTPEQ
LKRSNAEELIAPKYLNIEQEHYCGNIDVYVDDVRQHLSADVLRLPEGSGLQAMYIFNVGGSINAARIFNLETAVEALSSY
AFEGDKDKLQKLKELGGEFTRIADKASGEYQSKQDLMRAVLVEAMTSALNYWENVSGQSKFTFAEQSGLWRVYLDRSTLQ
TRTLDKYLRIETLPKTPRWRTVLNSLDYILEHCKEPGPDRTHIEMQRDKLQKLLTSE

Nucleotide

• Length: 3534 bp

>NTDB_id=408818 GPY12_RS03135 WP_199250778.1 647584..651117(-) (chiS) [Vibrio mimicus strain F9458]
TTGCGTCTATGCCCACACTTTAGCTTGGACTTACTTGTCAAAGTAAAAAAACTCGTTAATTTCGTTACTTTAGGTTTTTC
TTATCAATCACCCACTCATGCTTGGCGATCGCCACAGAGTTTCACCAAAAGTAATGCCTTAATTATGTTTAGGTTCTATC
GAAAACAAAAATTCAAGCGCCTGCAAAATACGCTAATGGCGGCATTTCTGGCACTCAGTATTATTCCATTAACCATCACG
GCGCTGTTTTTCCTCCATTCACACAGTAAAGATTTGGAAGAACAAAGTACCTCTTACCTTGTTTCAGTACGCGATACCAA
ACAGCAGCAAGTGATCGATTATATGATGGCCAAAGAGTCGGAAGTGATGGGCTTTGTCCGTTCCGAACTCGCTTATGCCA
GTGGTGGTCGGTTTTATGGCTTAGTAAACGCCTTCCAGCGCTTAGATGTCAGCATTGAAGCGGCGCGCGAGCATGCCCAA
CAGCGCTATATACCAGGCTCTGGTGATCAAATAAAAACCTCAGTACTGCCACAATCAAGTAGCTATGTGGGCAGTGAACG
TTATCGGCTCCTGCACAAACGTTATCATTGGGCTTATTTAGAGCTGCTGAAACGTTCGGACTTTGACGACATATTGTTGG
TTGATATTGAAGGCAACGTTGTTTACTCCATCTATAAACATGGCAACTTCGGCACCAATTTATTAACGGGAAAATATAAA
GATTCCAGTCTGGGGAGTACCTTTAAACGCCTCGAGCAAACCGTTAATGAACAGCGCAAGACTAACGAAGATTTCACACC
TGTGGTTATCTCTGACTTTGTGCAAGAAGATGGAAAACAATATGCTTGGCTCGGTGCACCCATCATTCAACAAGGGTATT
TGCACAGTTACGCTATGTTCCGCCTGCCAAGTAATGCGATCACTAAGCTGATCGCGGATGGCAGTAGCAATCCATCGATG
CAAACCATTTTAGTTGGCCAAGATCATCGTTCAAGAACCTTAACTTCCGCTGAAGTGGCAGTTGAAAAAAGCAAAGAAGT
GGTCGATTTAGCCTTATCTGGAAAACGTTCTGTCGGCACTTACACCAATACCGATGATGAAGAGATCATTGCTGCGTACG
CCCCAATTAATCTGAAAAGTATTCATTGGGCGTTAGTAGTAGAATTACCAGAAAAAGAGGCCTTTGCTCGCGTACGTCAG
TTAGAAAAGCTCTTCGTTTTCGCGATGCTGACGGCGATTGTCTTAGTGGTCATTGCTTCCCATTACCTATCCAACTTCAT
TACTTCCCCACTGTTGAAACTAACTTGGGCAGCAGAACGAGTCTCGGCGGGCGATCTTGATGAAGCAATGATCAATACCG
AGCGTAAAGATGAAATTGGCCGATTGGCGGTCAGTTTTGAACGCATGCAGCGCTCTATACGCGAAAAAATATCGCTGATC
AAATCGCAAAACAAAGAGCTAGAAAACAATCTCCTGATCATTCGTAAACAAAACGATGAATTGCAGCTCGCGAACAAACT
CAAAGATGAATTCCTCGCTACGACATCACACGAGTTACGCACACCCCTGCATGGCATGATCGGGATTGCTGAAGCGTTAG
TCTCTGGTGCCAATGGCCCACTGACCGCCGCTCATAAGTATCAGCTCGACATCATCATCAGTAGTGGACAACGTTTGGCC
ACCTTGGTTGATGACCTGCTGGACTACCACAAAATGCGCTATGGTGCGCTGGATATCCAAAAAAGTGCTGTCGATTTATC
GAGTGCAACCCGTTTGGTGCTTGAGCTTTCAAACCATTTGCTTGGCAAGAAAACGCTGCGCATCATTAATCAAGTCTCAG
AGCAACCTGTCTGGGTATCGGCCGATCCACAACGCTTAGAACAAGTTCTGTATAACCTGATCGGTAACGCGATCAAGTAC
ACCTCCGAAGGTAAGATTGTTATCTCAGCAACCTATATTGACGATAAAGTCAGGGTACAAGTCGTGGATACAGGACAAGG
TATTCCTGCTGAGCAGCTTGAACAGATCTTTGAACCTTTAATCCAAGCAGGGCGCGATGCCAGCCGCTATCGTCAAGGTG
CGGGACTCGGACTTTCCATTAGCCGTCAGTTAATTGAGCTAATGAACGGCACTCTTTATGTAAGTAGCCAGCCTATGGTT
GGTACGACATTCAGCTTTACTCTGCCGTTGGCCACACAAGAGGAAATTGACCAAGCTCGTTTGACTGAGTTACCTCATTT
CCAAGCACCGGAAATTTTAGATACCGAACTGCCAGAGCAAAGTACACTGCCTGAAAATGAGCATGGCCCACTTCTGCTTG
TCGCCGATGATGAACCAGTAAACCTCAGAGTCTTGGACAGCTTTTTACGTCTCGAAGGTTATCGCGTTCATACTGCTCAA
GATGGCCATGAAGTGCTTGAAGCCATTCAGCGTGAGAAACCGGAGCTCTTGTTACTAGACATCATGATGCCGGGCATGAG
TGGCTATCAAGTCTGTGAAAAACTAAGACAGACTTACGATCATGCTGAACTCCCTATCATCATGTTGACCGCTCTTAACC
AATCTGATGACCGAGTACGTGGATTTGAAGCTGGGGCGAATGACTATTTGTCCAAACCTTTTAATAAGCAGGAATTGGCT
GCGCGTATCGTTGCCCACCTCACTGCCAGCAAAGCTGAACTAAGGCGCATTGAAAATGCTCAGCTCCAAAAAGAGCTGAA
GCATCGTGCCATGGTAGAAGCCAGCTTACTCGAAACGCAAGGACGTTTGTTAGAGCAATTAGAATCGGCACCAGAAGCGA
TTCTATGCGTCAAAGAAGGCAACAAAGTACGCTTTGCTAACGAAGCAGCAGCCCGTTTATTTAGACGCACACCAGAACAG
CTCAAACGCTCGAATGCTGAAGAGTTGATTGCACCTAAATACCTGAATATTGAGCAAGAACATTACTGTGGCAACATCGA
CGTTTATGTGGATGATGTACGACAGCATCTGTCGGCAGATGTACTGCGCTTACCGGAAGGCTCTGGATTACAGGCCATGT
ACATTTTCAATGTGGGTGGCAGCATTAACGCAGCGCGCATTTTCAATCTTGAAACCGCTGTAGAGGCGCTCTCTAGTTAC
GCTTTCGAGGGTGACAAAGATAAACTGCAGAAGCTCAAAGAACTCGGTGGCGAGTTTACTCGCATAGCTGATAAAGCATC
AGGAGAATATCAATCCAAACAAGATTTGATGCGTGCTGTATTGGTGGAAGCCATGACCAGCGCCCTCAATTATTGGGAAA
ATGTTTCAGGGCAAAGTAAGTTCACGTTTGCAGAACAAAGTGGCCTGTGGCGCGTTTATCTAGACCGTAGCACCTTACAA
ACTCGCACCTTAGACAAGTATTTACGGATTGAGACACTGCCTAAAACACCGCGCTGGAGAACGGTTCTAAACTCGCTTGA
TTACATTCTTGAGCACTGTAAAGAGCCAGGACCAGATCGTACTCATATCGAAATGCAACGCGATAAACTGCAAAAGCTAC
TGACCAGTGAGTGA

Domains

Predicted by InterproScan.

• PAS domain (PAS_8) (927-961)

• Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c) (622-731)

• Response regulator receiver domain (Response_reg) (773-883)

• His Kinase A (phospho-acceptor) domain (HisKA) (508-573)

• HAMP domain (HAMP) (423-475)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
chiS	Vibrio cholerae strain A1552	95.837	100	0.958