Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   GPY12_RS02845 Genome accession   NZ_CP046846
Coordinates   583118..583636 (+) Length   172 a.a.
NCBI ID   WP_001130224.1    Uniprot ID   Q401L3
Organism   Vibrio mimicus strain F9458     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 578118..588636
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY12_RS02835 - 578523..581378 (+) 2856 WP_148545653.1 pitrilysin family protein -
  GPY12_RS02840 gshA 581490..583064 (+) 1575 WP_148545651.1 glutamate--cysteine ligase -
  GPY12_RS02845 luxS 583118..583636 (+) 519 WP_001130224.1 S-ribosylhomocysteine lyase Regulator
  GPY12_RS02850 - 583737..585011 (-) 1275 WP_000340995.1 HlyC/CorC family transporter -
  GPY12_RS02855 - 585094..585888 (-) 795 WP_000369274.1 inner membrane protein YpjD -
  GPY12_RS02860 ffh 586101..587486 (+) 1386 WP_000462723.1 signal recognition particle protein -
  GPY12_RS02865 rpsP 587726..587974 (+) 249 WP_000256449.1 30S ribosomal protein S16 -
  GPY12_RS02870 rimM 588002..588556 (+) 555 WP_148535896.1 ribosome maturation factor RimM -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19005.86 Da        Isoelectric Point: 5.5455

>NTDB_id=408816 GPY12_RS02845 WP_001130224.1 583118..583636(+) (luxS) [Vibrio mimicus strain F9458]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTLPNKDILSERGIHTLEHLYAGFMRAHLNGSQVEIIDISP
MGCRTGFYMSLIGAPTEQQVAQAWLAAMQDVLKVESQDKIPELNEYQCGTAAMHSLEEAKAIAQKVIAAGISVNRNDDLA
LPESMLNELKVH

Nucleotide


Download         Length: 519 bp        

>NTDB_id=408816 GPY12_RS02845 WP_001130224.1 583118..583636(+) (luxS) [Vibrio mimicus strain F9458]
ATGCCATTATTAGACAGCTTCACCGTCGATCATACTCGTATGAATGCACCAGCAGTGCGTGTTGCGAAGACCATGCAAAC
CCCAAAAGGCGATACCATTACGGTATTTGATTTGCGTTTTACTCTGCCAAACAAAGATATTTTGTCTGAGCGCGGTATTC
ACACTCTGGAGCATCTGTACGCGGGCTTTATGCGTGCTCACCTTAATGGAAGCCAAGTTGAGATTATCGATATTTCTCCT
ATGGGCTGCCGTACTGGCTTCTATATGAGTTTGATCGGTGCGCCAACTGAGCAGCAAGTGGCACAAGCTTGGTTAGCGGC
AATGCAAGATGTGTTGAAAGTGGAAAGCCAAGATAAGATCCCAGAGCTAAACGAATACCAGTGCGGTACAGCAGCGATGC
ATTCTCTGGAAGAAGCCAAAGCGATTGCGCAGAAAGTGATTGCGGCAGGGATTTCGGTTAACCGTAATGATGACTTGGCG
CTGCCTGAGTCAATGCTGAATGAGCTCAAGGTTCACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q401L3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

95.93

100

0.959

Multiple sequence alignment