Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   GPY12_RS02705 Genome accession   NZ_CP046846
Coordinates   556253..557263 (+) Length   336 a.a.
NCBI ID   WP_000116730.1    Uniprot ID   A0A1D8SDR3
Organism   Vibrio mimicus strain F9458     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 551253..562263
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY12_RS02670 ftsB 551304..551588 (+) 285 WP_001263188.1 cell division protein FtsB -
  GPY12_RS02675 ispD 551585..552283 (+) 699 WP_148546842.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  GPY12_RS02680 ispF 552280..552756 (+) 477 WP_000619214.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  GPY12_RS02685 truD 552786..553871 (+) 1086 WP_148546843.1 tRNA pseudouridine(13) synthase TruD -
  GPY12_RS02690 surE 553873..554625 (+) 753 WP_000698385.1 5'/3'-nucleotidase SurE -
  GPY12_RS02695 - 554618..555244 (+) 627 WP_000002984.1 protein-L-isoaspartate(D-aspartate) O-methyltransferase -
  GPY12_RS02700 nlpD 555244..556179 (+) 936 WP_000189384.1 murein hydrolase activator NlpD -
  GPY12_RS02705 rpoS 556253..557263 (+) 1011 WP_000116730.1 RNA polymerase sigma factor RpoS Regulator
  GPY12_RS02710 mutS 557341..559929 (-) 2589 WP_158139268.1 DNA mismatch repair protein MutS -
  GPY12_RS02715 cysM 560258..561145 (-) 888 WP_022577563.1 cysteine synthase CysM -

Sequence

Protein


Download         Length: 336 a.a.        Molecular weight: 38584.40 Da        Isoelectric Point: 4.3159

>NTDB_id=408813 GPY12_RS02705 WP_000116730.1 556253..557263(+) (rpoS) [Vibrio mimicus strain F9458]
MSVSNTVTKVEEFDFEDEALEVLEADDELSSDEELVTAEGASDEVREEFDASAKSLDATQMYLSEIGFSPLLTAEEEVLY
ARRALRGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALM
NQTRTIRLPIHVVKELNIYLRTARELSQRLDHEPTPEEIALELDKPVDDVTKMLRLNERISSVDTPIGGDGDKALLDILP
DSNNADPEFSTQDDDIRESLLNWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILVK
QGLNMEALFNVEYDVN

Nucleotide


Download         Length: 1011 bp        

>NTDB_id=408813 GPY12_RS02705 WP_000116730.1 556253..557263(+) (rpoS) [Vibrio mimicus strain F9458]
ATGAGTGTCAGCAATACCGTAACCAAAGTAGAAGAGTTTGATTTTGAAGATGAAGCACTGGAAGTGCTAGAAGCGGATGA
TGAGCTCTCGAGTGATGAAGAATTAGTGACCGCTGAAGGGGCAAGTGATGAAGTTCGCGAAGAGTTTGATGCTTCTGCGA
AAAGTCTCGATGCCACGCAAATGTATCTCAGTGAAATTGGTTTCTCACCTCTACTGACTGCCGAAGAAGAAGTGCTTTAT
GCTCGTCGTGCTTTACGTGGCGATGAAGCAGCACGTAAACGCATGATTGAAAGTAACTTGCGTTTAGTCGTTAAAATTTC
ACGTCGCTACAGCAATCGTGGATTAGCACTGCTCGATCTGATTGAAGAAGGTAACTTAGGTCTCATTCGTGCGGTTGAAA
AATTCGATCCAGAACGTGGTTTCCGCTTTTCAACTTATGCGACATGGTGGATCCGTCAAACCATCGAACGTGCGCTGATG
AACCAAACTCGCACCATTCGTCTACCGATTCATGTTGTCAAAGAATTGAACATTTACCTGCGTACTGCTCGTGAATTGTC
ACAACGTCTTGACCACGAACCTACGCCAGAAGAAATCGCGCTTGAGCTCGATAAACCGGTTGATGATGTAACGAAGATGC
TGCGTCTCAACGAACGTATCAGCTCTGTTGATACACCGATTGGTGGCGATGGTGATAAAGCACTGCTGGATATTCTGCCG
GACTCCAATAATGCGGATCCTGAGTTTTCGACTCAAGATGATGACATCCGTGAATCTCTGCTCAACTGGCTTGATGAACT
CAATCCAAAACAGAAAGAAGTTCTTGCTCGTCGTTTCGGTCTGTTGGGTTATGAGCCCTCCACCTTGGAAGAAGTGGGAC
GTGAGATCAATCTGACTCGTGAGCGTGTACGCCAAATTCAGGTAGAAGGGTTACGCCGTCTGCGTGAGATCTTGGTGAAA
CAAGGTTTGAATATGGAAGCGCTGTTTAACGTCGAATACGACGTCAACTAA

Domains

Predicted by InterproScan.

Sigma-70 region 3 (Sigma70_r3)

(175-248)

Sigma-70, region 4 (Sigma70_r4)

(263-316)

Sigma-70 region 2 (Sigma70_r2)

(95-164)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(57-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1D8SDR3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

97.305

99.405

0.967

Multiple sequence alignment