Detailed information NTG0408769

Bioinformatically predicted

Overview

• Name: sbcB
• Type: Machinery gene
• Locus tag: GPY04_RS03980
• Genome accession: NZ_CP046844
• Coordinates: 859558..860982 (-)
• Length: 474 a.a.
• NCBI ID: WP_001183680.1
• Uniprot ID: A0A0H3AJR3
• Organism: Vibrio cholerae C6706
• Function: promote homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 854558..865982

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GPY04_RS03955	purT	855067..856242 (-)	1176	WP_000468082.1	phosphoribosylglycinamide formyltransferase 2	-
GPY04_RS03960	-	856396..857271 (-)	876	WP_000462872.1	AEC family transporter	-
GPY04_RS03965	cdd	857430..858317 (-)	888	WP_001245905.1	cytidine deaminase	-
GPY04_RS03970	-	858487..859161 (-)	675	WP_000266245.1	LrgB family protein	-
GPY04_RS03975	-	859152..859526 (-)	375	WP_001881007.1	CidA/LrgA family protein	-
GPY04_RS03980	sbcB	859558..860982 (-)	1425	WP_001183680.1	exodeoxyribonuclease I	Machinery gene
GPY04_RS03985	-	861128..862501 (-)	1374	WP_000117953.1	L-cystine transporter	-
GPY04_RS03990	msrB	862847..863293 (+)	447	WP_000935885.1	peptide-methionine (R)-S-oxide reductase MsrB	-
GPY04_RS03995	cobT	863904..864929 (+)	1026	WP_000887084.1	nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase	-
GPY04_RS04000	-	864929..865714 (+)	786	WP_000718969.1	adenosylcobinamide-GDP ribazoletransferase	-

Sequence

Protein

• Length: 474 a.a.
• Molecular weight: 54598.02 Da
• Isoelectric Point: 6.0792

>NTDB_id=408769 GPY04_RS03980 WP_001183680.1 859558..860982(-) (sbcB) [Vibrio cholerae C6706]
MQQEHQPTFFFFDYETWGVNPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQLPNDYLPAPEAALITGITPQKANSQGLAEP
EFIARIHAELSTPNTINLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQHGNSRWDLLDVLRACHALRPEGIEWPENDDGFT
SFKLEHLSVANGIEHSNAHDAMADVIATIELAKKVKAAQPKLFDYFFTMRHKRKLTELIDIVNQTPLMHVSGMLGRERHY
TSWIVPIAWHPTNQNAVIVVDLGKDPQPLLELDAETLQARLYTRYEDLAPDELPVPVKLVHLNKCPILAPAKTLTAENAQ
KIGIDREQCLAHLNVIRQHPEIREKLVTVFSQEREFNQESDVDSQLYAGFFSPADRAAMEIIRTTAPENLGSLAIRVADK
RIEPLLFRYRARHYPHTLTDTEQRRWAAHCRDYFERNLEGYMLNLENLVHEHQADPKKMAILKSVYHYVEKLAC

Nucleotide

• Length: 1425 bp

>NTDB_id=408769 GPY04_RS03980 WP_001183680.1 859558..860982(-) (sbcB) [Vibrio cholerae C6706]
ATGCAGCAAGAACACCAGCCCACATTCTTCTTTTTCGACTACGAGACTTGGGGAGTCAATCCCGCAAAAGATCGTCCTAG
TCAGTTTGCGGGTGTGCGTACCGATATGGACTTCAACATCATCGGCGAGCCTTTGGTAATTTACTGTCAGCTGCCCAACG
ACTATTTGCCCGCCCCTGAGGCCGCATTGATCACAGGGATCACCCCTCAAAAAGCCAATAGCCAAGGTCTCGCGGAGCCC
GAATTTATCGCGCGTATTCATGCTGAGCTCTCCACACCCAATACCATCAACCTAGGTTATAACAGCATACGTTTTGATGA
TGAAGTGACGCGCTACACCTGCTATCGCAACTTTATCGACCCCTATGCTTGGAGCTGGCAACACGGCAATTCCCGTTGGG
ATCTGCTGGATGTGCTTCGCGCGTGTCATGCTTTGCGTCCTGAAGGTATCGAGTGGCCGGAAAATGATGACGGCTTCACC
AGCTTTAAACTGGAACATCTTTCTGTTGCCAACGGCATTGAGCACAGCAACGCGCACGATGCGATGGCCGATGTGATTGC
CACCATTGAACTGGCGAAAAAAGTCAAAGCCGCGCAGCCGAAATTGTTCGACTACTTCTTCACTATGCGCCACAAACGAA
AGCTGACAGAACTGATTGATATTGTGAACCAAACTCCGCTGATGCATGTTTCTGGCATGCTTGGGCGTGAGCGTCACTAC
ACTAGCTGGATTGTGCCTATTGCTTGGCATCCAACCAATCAAAATGCGGTGATTGTGGTGGATTTGGGTAAAGACCCTCA
GCCGCTGCTGGAGCTCGATGCCGAAACGCTGCAAGCGCGTCTCTATACGCGGTATGAAGACCTAGCGCCGGATGAGCTAC
CAGTACCCGTGAAATTGGTGCATCTCAATAAATGCCCTATTCTCGCTCCGGCCAAAACCTTGACCGCAGAAAATGCACAA
AAGATTGGTATTGACCGCGAACAGTGTCTCGCGCACTTGAATGTGATTCGTCAACACCCCGAGATTCGTGAAAAGCTGGT
GACGGTATTTAGCCAAGAGCGCGAATTTAACCAAGAGAGTGATGTGGATAGCCAACTCTATGCCGGCTTTTTCTCCCCAG
CCGATCGCGCGGCGATGGAGATCATCCGCACCACTGCACCGGAGAATCTGGGCAGCTTAGCGATCCGGGTGGCCGATAAG
CGCATTGAACCGCTGCTGTTTCGTTATCGTGCGCGCCATTATCCCCACACCTTAACCGATACCGAGCAACGCCGCTGGGC
AGCGCATTGTCGTGACTATTTCGAGCGCAATCTAGAAGGTTATATGTTGAATTTGGAAAATCTGGTGCATGAACATCAAG
CTGATCCAAAGAAAATGGCGATTTTAAAATCCGTCTACCATTACGTGGAAAAACTCGCTTGCTAA

Domains

Predicted by InterproScan.

• Exonuclease C-terminal (Exonuc_X-T_C) (210-470)

• Exonuclease (RNase_T) (11-191)

3D structure

• AlphaFold DB: A0A0H3AJR3

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
sbcB	Vibrio cholerae O1 biovar El Tor strain E7946	100	100	1