Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   GPY04_RS00750 Genome accession   NZ_CP046844
Coordinates   144076..144594 (+) Length   172 a.a.
NCBI ID   WP_001130227.1    Uniprot ID   -
Organism   Vibrio cholerae C6706     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 139076..149594
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY04_RS00740 - 139486..142341 (+) 2856 WP_001233047.1 pitrilysin family protein -
  GPY04_RS00745 gshA 142453..144027 (+) 1575 WP_000032608.1 glutamate--cysteine ligase -
  GPY04_RS00750 luxS 144076..144594 (+) 519 WP_001130227.1 S-ribosylhomocysteine lyase Regulator
  GPY04_RS00755 - 144664..145944 (-) 1281 WP_000340990.1 HlyC/CorC family transporter -
  GPY04_RS00760 - 146027..146821 (-) 795 WP_000369278.1 inner membrane protein YpjD -
  GPY04_RS00765 ffh 147034..148419 (+) 1386 WP_000462720.1 signal recognition particle protein -
  GPY04_RS00770 rpsP 148655..148903 (+) 249 WP_000256449.1 30S ribosomal protein S16 -
  GPY04_RS00775 rimM 148931..149485 (+) 555 WP_000061906.1 ribosome maturation factor RimM -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19080.90 Da        Isoelectric Point: 5.2199

>NTDB_id=408761 GPY04_RS00750 WP_001130227.1 144076..144594(+) (luxS) [Vibrio cholerae C6706]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTMPNKDILSERGIHTLEHLYAGFMRNHLNGSQVEIIDISP
MGCRTGFYMSLIGAPTEQQVAQAWLAAMQDVLKVESQEQIPELNEYQCGTAAMHSLEEAKAIAKNVIAAGISVNRNDELA
LPESMLNELKVH

Nucleotide


Download         Length: 519 bp        

>NTDB_id=408761 GPY04_RS00750 WP_001130227.1 144076..144594(+) (luxS) [Vibrio cholerae C6706]
ATGCCATTATTAGACAGTTTTACCGTCGATCATACTCGTATGAATGCACCGGCGGTGCGTGTTGCCAAAACCATGCAAAC
CCCAAAAGGGGATACGATTACCGTATTTGATTTGCGTTTTACTATGCCAAACAAAGATATCTTGTCTGAGCGCGGTATCC
ATACTCTAGAGCATCTCTACGCGGGCTTTATGCGCAATCACCTTAACGGCAGCCAAGTGGAGATCATCGATATTTCACCA
ATGGGTTGCCGTACAGGTTTCTACATGAGCTTGATTGGTGCGCCGACAGAACAGCAAGTGGCACAAGCATGGCTAGCCGC
AATGCAAGATGTGTTGAAAGTTGAAAGCCAAGAGCAAATTCCTGAGCTGAATGAGTACCAGTGCGGCACTGCGGCGATGC
ACTCGCTCGAAGAAGCCAAAGCGATTGCGAAAAACGTGATTGCGGCAGGCATCTCGGTTAACCGTAACGATGAGTTGGCG
CTGCCCGAATCTATGCTCAATGAGCTGAAGGTTCACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

100

100

1

Multiple sequence alignment