Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   GPY07_RS05340 Genome accession   NZ_CP046840
Coordinates   1199160..1199678 (-) Length   172 a.a.
NCBI ID   WP_001130227.1    Uniprot ID   -
Organism   Vibrio cholerae strain F9993     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1194160..1204678
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY07_RS05315 rimM 1194269..1194823 (-) 555 WP_000061906.1 ribosome maturation factor RimM -
  GPY07_RS05320 rpsP 1194851..1195099 (-) 249 WP_000256449.1 30S ribosomal protein S16 -
  GPY07_RS05325 ffh 1195335..1196720 (-) 1386 WP_000462720.1 signal recognition particle protein -
  GPY07_RS05330 - 1196933..1197727 (+) 795 WP_000369278.1 inner membrane protein YpjD -
  GPY07_RS05335 - 1197810..1199090 (+) 1281 WP_000340990.1 HlyC/CorC family transporter -
  GPY07_RS05340 luxS 1199160..1199678 (-) 519 WP_001130227.1 S-ribosylhomocysteine lyase Regulator
  GPY07_RS05345 gshA 1199727..1201301 (-) 1575 WP_000032608.1 glutamate--cysteine ligase -
  GPY07_RS05350 - 1201413..1204268 (-) 2856 WP_001233047.1 pitrilysin family protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19080.90 Da        Isoelectric Point: 5.2199

>NTDB_id=408716 GPY07_RS05340 WP_001130227.1 1199160..1199678(-) (luxS) [Vibrio cholerae strain F9993]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTMPNKDILSERGIHTLEHLYAGFMRNHLNGSQVEIIDISP
MGCRTGFYMSLIGAPTEQQVAQAWLAAMQDVLKVESQEQIPELNEYQCGTAAMHSLEEAKAIAKNVIAAGISVNRNDELA
LPESMLNELKVH

Nucleotide


Download         Length: 519 bp        

>NTDB_id=408716 GPY07_RS05340 WP_001130227.1 1199160..1199678(-) (luxS) [Vibrio cholerae strain F9993]
ATGCCATTATTAGACAGTTTTACCGTCGATCATACTCGTATGAATGCACCGGCGGTGCGTGTTGCCAAAACCATGCAAAC
CCCAAAAGGGGATACGATTACCGTATTTGATTTGCGTTTTACTATGCCAAACAAAGATATCTTGTCTGAGCGCGGTATCC
ATACTCTAGAGCATCTCTACGCGGGCTTTATGCGCAATCACCTTAACGGCAGCCAAGTGGAGATCATCGATATTTCACCA
ATGGGTTGCCGTACAGGTTTCTACATGAGCTTGATTGGTGCGCCGACAGAACAGCAAGTGGCACAAGCATGGCTAGCCGC
AATGCAAGATGTGTTGAAAGTTGAAAGCCAAGAGCAAATTCCTGAGCTGAATGAGTACCAGTGCGGCACTGCGGCGATGC
ACTCGCTCGAAGAAGCCAAAGCGATTGCGAAAAACGTGATTGCGGCAGGCATCTCGGTTAACCGTAACGATGAGTTGGCG
CTGCCCGAATCTATGCTCAATGAGCTGAAGGTTCACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

100

100

1

Multiple sequence alignment