Detailed information    

insolico Bioinformatically predicted

Overview

Name   mutX   Type   Machinery gene
Locus tag   SSUD12_RS04040 Genome accession   NC_017621
Coordinates   801389..801871 (-) Length   160 a.a.
NCBI ID   WP_014637825.1    Uniprot ID   -
Organism   Streptococcus suis D12     
Function   DNA mismatch repair (predicted from homology)   
Homologous recombination

Genomic Context

Location: 796389..806871
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSUD12_RS04015 (SSUD12_0779) pheT 796700..799099 (+) 2400 WP_014637820.1 phenylalanine--tRNA ligase subunit beta -
  SSUD12_RS04020 (SSUD12_0780) - 799154..799420 (+) 267 WP_014637821.1 DUF2087 domain-containing protein -
  SSUD12_RS04025 (SSUD12_0781) - 799441..799743 (-) 303 WP_014637822.1 hypothetical protein -
  SSUD12_RS04030 (SSUD12_0782) - 799936..800679 (+) 744 WP_014637823.1 polyphosphate polymerase domain-containing protein -
  SSUD12_RS04035 (SSUD12_0783) - 800666..801343 (+) 678 WP_014637824.1 DUF4956 domain-containing protein -
  SSUD12_RS04040 (SSUD12_0784) mutX 801389..801871 (-) 483 WP_014637825.1 NUDIX hydrolase Machinery gene
  SSUD12_RS04045 (SSUD12_0785) folE 802038..802601 (+) 564 WP_014637826.1 GTP cyclohydrolase I FolE -
  SSUD12_RS04050 (SSUD12_0786) folP 802610..803422 (+) 813 WP_014637827.1 dihydropteroate synthase -
  SSUD12_RS04055 (SSUD12_0787) folB 803415..803777 (+) 363 WP_002938086.1 dihydroneopterin aldolase -
  SSUD12_RS04060 (SSUD12_0788) folK 803774..804262 (+) 489 WP_014637828.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  SSUD12_RS04065 (SSUD12_0789) - 804313..805623 (+) 1311 WP_014637829.1 GntP family permease -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 18496.88 Da        Isoelectric Point: 4.5662

>NTDB_id=40870 SSUD12_RS04040 WP_014637825.1 801389..801871(-) (mutX) [Streptococcus suis D12]
MTKKPVQLATICYIDNGKEFLLLHRNKKENDVHQGKWIGVGGKLEPGETPQACAIREVFEETGLTVTKHALKGVITFPDF
TPNTDWYTYVFKITGFEGSLIDCNEGDLEWVPYDQVLTKPTWEGDRHFQEWLLEGKPFFSACFRYDGDKLLDYSVDFYEE

Nucleotide


Download         Length: 483 bp        

>NTDB_id=40870 SSUD12_RS04040 WP_014637825.1 801389..801871(-) (mutX) [Streptococcus suis D12]
ATGACCAAGAAACCCGTCCAACTCGCTACCATTTGCTACATTGATAATGGCAAGGAATTTCTCCTGCTCCATCGCAATAA
AAAAGAAAACGATGTCCATCAAGGGAAATGGATTGGGGTCGGTGGCAAGCTGGAACCTGGCGAAACACCACAGGCTTGCG
CTATTCGTGAAGTCTTTGAGGAAACTGGGCTTACTGTAACGAAGCATGCTCTAAAAGGAGTCATCACCTTTCCAGACTTC
ACACCAAACACTGACTGGTACACCTATGTCTTTAAGATAACTGGTTTTGAAGGAAGTCTTATTGACTGCAATGAAGGTGA
CTTAGAGTGGGTTCCTTACGACCAGGTCTTAACCAAACCAACCTGGGAGGGCGACCGGCATTTTCAAGAATGGCTATTAG
AGGGCAAACCATTTTTTTCCGCTTGCTTCCGCTATGATGGGGACAAACTGCTGGATTACAGTGTTGATTTTTATGAAGAA
TAA

Domains

Predicted by InterProScan.

NUDIX domain (NUDIX)

(8-132)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  mutX Streptococcus pneumoniae R6

79.739

95.625

0.763

Multiple sequence alignment