Detailed information NTG0408697

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: H0X93_RS17390
• Genome accession: NZ_CP059125
• Coordinates: 3607565..3608557 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain EC45
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3602565..3613557

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
H0X93_RS17370 (H0X93_17315)	otnK	3603340..3604602 (+)	1263	WP_000590392.1	3-oxo-tetronate kinase	-
H0X93_RS17375 (H0X93_17320)	ygbL	3604599..3605237 (+)	639	WP_001278994.1	aldolase	-
H0X93_RS17380 (H0X93_17325)	ygbM	3605242..3606018 (+)	777	WP_001136918.1	HPr family phosphocarrier protein	-
H0X93_RS17385 (H0X93_17330)	ygbN	3606107..3607471 (+)	1365	WP_000104456.1	GntP family transporter	-
H0X93_RS17390 (H0X93_17335)	rpoS	3607565..3608557 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
H0X93_RS17395 (H0X93_17340)	nlpD	3608620..3609714 (-)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
H0X93_RS17400 (H0X93_17345)	pcm	3609899..3610525 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
H0X93_RS17405 (H0X93_17350)	surE	3610519..3611280 (-)	762	WP_001374723.1	5'/3'-nucleotidase SurE	-
H0X93_RS17410 (H0X93_17355)	truD	3611261..3612310 (-)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
H0X93_RS17415 (H0X93_17360)	ispF	3612307..3612786 (-)	480	WP_001374730.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
H0X93_RS17420 (H0X93_17365)	ispD	3612786..3613496 (-)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=408697 H0X93_RS17390 WP_000081550.1 3607565..3608557(-) (rpoS) [Escherichia coli strain EC45]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=408697 H0X93_RS17390 WP_000081550.1 3607565..3608557(-) (rpoS) [Escherichia coli strain EC45]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715