Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   GPY01_RS15290 Genome accession   NZ_CP046839
Coordinates   2348283..2348915 (-) Length   210 a.a.
NCBI ID   WP_000242749.1    Uniprot ID   A0A6G8D3R0
Organism   Vibrio cholerae strain 2011EL-1271     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2343283..2353915
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY01_RS15270 - 2343433..2344644 (+) 1212 WP_000215480.1 aspartate aminotransferase family protein -
  GPY01_RS15275 astA 2344784..2345803 (+) 1020 WP_000962050.1 arginine N-succinyltransferase -
  GPY01_RS15280 astD 2345813..2347270 (+) 1458 WP_000150138.1 succinylglutamate-semialdehyde dehydrogenase -
  GPY01_RS15285 - 2347413..2348204 (+) 792 WP_000189096.1 DUF1338 domain-containing protein -
  GPY01_RS15290 crp 2348283..2348915 (-) 633 WP_000242749.1 cAMP-activated global transcriptional regulator CRP Regulator
  GPY01_RS15295 - 2349158..2350027 (-) 870 WP_001274667.1 phosphoribulokinase -
  GPY01_RS15300 - 2350124..2350333 (-) 210 WP_001888622.1 YheU family protein -
  GPY01_RS15305 - 2350462..2351451 (-) 990 WP_001965826.1 hydrolase -
  GPY01_RS15310 - 2351448..2351933 (-) 486 WP_001278733.1 TIGR02444 family protein -
  GPY01_RS15315 - 2351934..2353850 (-) 1917 WP_001965823.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23635.45 Da        Isoelectric Point: 8.2784

>NTDB_id=408697 GPY01_RS15290 WP_000242749.1 2348283..2348915(-) (crp) [Vibrio cholerae strain 2011EL-1271]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEG
QERTAWVRAKTPCEVAEISFKKFRQLIQVNPDILMRLSGQMARRLQVTSQKVGDLAFLDVTGRIAQTLLNLARQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEEQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=408697 GPY01_RS15290 WP_000242749.1 2348283..2348915(-) (crp) [Vibrio cholerae strain 2011EL-1271]
ATGGTTCTAGGTAAACCTCAAACCGATCCAACACTAGAGTGGTTTCTTTCACATTGTCACATTCATAAGTACCCATCAAA
AAGCACGCTGATCCACGCGGGTGAGAAGGCGGAAACGCTGTACTACATCGTAAAAGGTTCAGTTGCGGTACTGATCAAAG
ATGAAGAAGGTAAAGAGATGATTCTCTCTTACCTGAACCAAGGTGATTTCATCGGTGAACTCGGCCTGTTTGAAGAAGGT
CAAGAGCGTACCGCTTGGGTTCGTGCCAAAACACCGTGTGAAGTGGCTGAAATCTCATTTAAGAAATTCCGTCAGTTAAT
CCAAGTTAACCCAGACATTTTGATGCGCCTTTCAGGTCAAATGGCTCGTCGTCTGCAAGTGACCAGCCAGAAAGTTGGCG
ACCTTGCGTTCCTAGACGTAACTGGCCGTATCGCACAGACTCTGCTGAATCTTGCACGTCAGCCAGATGCGATGACTCAC
CCTGACGGTATGCAAATCAAGATCACTCGCCAAGAGATCGGTCAAATTGTTGGCTGTTCTCGCGAAACCGTTGGCCGCAT
CCTGAAGATGCTGGAAGAGCAGAACCTGATCTCTGCCCACGGTAAAACCATCGTGGTTTACGGCACTCGCTAA

Domains

Predicted by InterproScan.

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6G8D3R0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

100

100

1
  crp Haemophilus influenzae Rd KW20

75.49

97.143

0.733
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467

Multiple sequence alignment