Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   GPY01_RS14830 Genome accession   NZ_CP046839
Coordinates   2240861..2241379 (+) Length   172 a.a.
NCBI ID   WP_000792033.1    Uniprot ID   -
Organism   Vibrio cholerae strain 2011EL-1271     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2235861..2246379
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY01_RS14810 - 2236078..2238555 (-) 2478 WP_000668734.1 penicillin-binding protein 1A -
  GPY01_RS14815 pilM 2238698..2239714 (+) 1017 WP_000520444.1 type IV pilus assembly protein PilM Machinery gene
  GPY01_RS14820 pilN 2239704..2240288 (+) 585 WP_000902746.1 PilN domain-containing protein Machinery gene
  GPY01_RS14825 pilO 2240281..2240871 (+) 591 WP_000157690.1 type 4a pilus biogenesis protein PilO Machinery gene
  GPY01_RS14830 pilP 2240861..2241379 (+) 519 WP_000792033.1 pilus assembly protein PilP Machinery gene
  GPY01_RS14835 pilQ 2241405..2243120 (+) 1716 WP_000788426.1 type IV pilus secretin PilQ family protein Machinery gene
  GPY01_RS14840 aroK 2243307..2243831 (+) 525 WP_000818616.1 shikimate kinase AroK -
  GPY01_RS14845 aroB 2243859..2244944 (+) 1086 WP_000439805.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19074.22 Da        Isoelectric Point: 10.0857

>NTDB_id=408695 GPY01_RS14830 WP_000792033.1 2240861..2241379(+) (pilP) [Vibrio cholerae strain 2011EL-1271]
MKNKPLGLWLMSLLVLVGCKANQDDLTSYVAQVEREARKEVTKLKPILEFEATSYQQHKGREPFVLPKEALVQNQPLAKA
DCWQPVPRAKNGPLERYPLHQLRLKGVMSSGGSISALVQTPAGSVVKVKAGQYVGINNGKVTRVDDNYLLINETLPDGLG
CWNQRNVKLALK

Nucleotide


Download         Length: 519 bp        

>NTDB_id=408695 GPY01_RS14830 WP_000792033.1 2240861..2241379(+) (pilP) [Vibrio cholerae strain 2011EL-1271]
ATGAAAAATAAACCGCTTGGATTATGGCTGATGAGTTTATTGGTGTTGGTCGGGTGTAAGGCGAACCAAGATGATTTGAC
CTCATACGTCGCGCAAGTTGAGCGTGAAGCGCGCAAAGAAGTGACTAAGCTCAAGCCCATTTTAGAGTTTGAAGCCACGT
CCTATCAGCAGCACAAGGGGCGTGAGCCGTTTGTCTTACCGAAAGAAGCGTTAGTGCAAAACCAACCGCTAGCCAAAGCC
GACTGTTGGCAACCCGTGCCACGTGCGAAAAATGGGCCGTTGGAGCGTTATCCATTGCACCAATTGCGCTTAAAAGGGGT
GATGAGCAGCGGGGGCAGTATCTCTGCCTTAGTGCAAACGCCGGCAGGGAGTGTGGTCAAGGTTAAGGCGGGTCAGTATG
TCGGAATCAATAATGGCAAAGTCACCCGAGTCGATGACAACTATTTGTTAATTAATGAAACTTTGCCTGATGGCTTAGGG
TGTTGGAATCAGCGTAACGTCAAGCTGGCTTTAAAATAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(25-171)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Vibrio cholerae strain A1552

99.419

100

0.994
  pilP Vibrio campbellii strain DS40M4

56.977

100

0.57

Multiple sequence alignment