Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   GPY01_RS10745 Genome accession   NZ_CP046839
Coordinates   1389182..1389700 (-) Length   172 a.a.
NCBI ID   WP_001130229.1    Uniprot ID   -
Organism   Vibrio cholerae strain 2011EL-1271     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1384182..1394700
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY01_RS10720 rimM 1384291..1384845 (-) 555 WP_000061906.1 ribosome maturation factor RimM -
  GPY01_RS10725 rpsP 1384873..1385121 (-) 249 WP_000256449.1 30S ribosomal protein S16 -
  GPY01_RS10730 ffh 1385357..1386742 (-) 1386 WP_000462714.1 signal recognition particle protein -
  GPY01_RS10735 - 1386955..1387749 (+) 795 WP_000369278.1 inner membrane protein YpjD -
  GPY01_RS10740 - 1387832..1389112 (+) 1281 WP_000340990.1 HlyC/CorC family transporter -
  GPY01_RS10745 luxS 1389182..1389700 (-) 519 WP_001130229.1 S-ribosylhomocysteine lyase Regulator
  GPY01_RS10750 gshA 1389749..1391323 (-) 1575 WP_000032616.1 glutamate--cysteine ligase -
  GPY01_RS10755 - 1391435..1394290 (-) 2856 WP_184480118.1 pitrilysin family protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19108.96 Da        Isoelectric Point: 5.2199

>NTDB_id=408676 GPY01_RS10745 WP_001130229.1 1389182..1389700(-) (luxS) [Vibrio cholerae strain 2011EL-1271]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTMPNKDILSERGIHTLEHLYAGFMRNHLNGSQVEIIDISP
MGCRTGFYMSLIGAPTEQQVAQAWLAAMQDVLKVESQEQIPELNEYQCGTAAMHSLEEAKVIAKNVIAAGISVNRNDELA
LPESMLNELKVH

Nucleotide


Download         Length: 519 bp        

>NTDB_id=408676 GPY01_RS10745 WP_001130229.1 1389182..1389700(-) (luxS) [Vibrio cholerae strain 2011EL-1271]
ATGCCATTATTAGACAGTTTTACCGTCGATCATACCCGTATGAATGCACCGGCGGTGCGTGTTGCCAAAACCATGCAAAC
CCCAAAAGGGGATACGATTACCGTATTTGATTTGCGTTTTACTATGCCAAACAAAGATATCTTGTCTGAGCGCGGTATCC
ATACTCTAGAGCATCTCTACGCGGGCTTTATGCGTAATCACCTTAACGGCAGCCAAGTGGAGATCATCGATATTTCACCA
ATGGGTTGCCGTACAGGTTTCTACATGAGCTTGATTGGTGCGCCGACAGAACAGCAAGTGGCACAAGCATGGCTAGCCGC
AATGCAAGATGTGTTGAAAGTCGAAAGCCAAGAGCAAATTCCTGAGCTGAATGAGTACCAGTGCGGCACTGCGGCGATGC
ACTCGCTGGAAGAAGCCAAAGTGATTGCGAAAAACGTGATTGCGGCAGGTATCTCGGTTAACCGTAACGATGAGTTGGCG
CTGCCCGAATCTATGCTCAATGAGCTGAAGGTTCACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

99.419

100

0.994

Multiple sequence alignment