Detailed information NTG0408668

Bioinformatically predicted

Overview

• Name: sbcB
• Type: Machinery gene
• Locus tag: GPY01_RS07585
• Genome accession: NZ_CP046839
• Coordinates: 692689..694113 (+)
• Length: 474 a.a.
• NCBI ID: WP_032470830.1
• Uniprot ID: -
• Organism: Vibrio cholerae strain 2011EL-1271
• Function: promote homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 687689..699113

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GPY01_RS07565	-	687959..688744 (-)	786	WP_000718973.1	adenosylcobinamide-GDP ribazoletransferase	-
GPY01_RS07570	cobT	688744..689769 (-)	1026	WP_000887075.1	nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase	-
GPY01_RS07575	msrB	690380..690826 (-)	447	WP_000935882.1	peptide-methionine (R)-S-oxide reductase MsrB	-
GPY01_RS07580	-	691172..692545 (+)	1374	WP_000117956.1	L-cystine transporter	-
GPY01_RS07585	sbcB	692689..694113 (+)	1425	WP_032470830.1	exodeoxyribonuclease I	Machinery gene
GPY01_RS07590	-	694145..694519 (+)	375	WP_001881007.1	CidA/LrgA family protein	-
GPY01_RS07595	-	694510..695184 (+)	675	WP_000266239.1	LrgB family protein	-
GPY01_RS07600	cdd	695354..696241 (+)	888	WP_001245907.1	cytidine deaminase	-
GPY01_RS07605	-	696400..697275 (+)	876	WP_032481211.1	AEC family transporter	-
GPY01_RS07610	purT	697429..698604 (+)	1176	WP_172974546.1	phosphoribosylglycinamide formyltransferase 2	-

Sequence

Protein

• Length: 474 a.a.
• Molecular weight: 54499.91 Da
• Isoelectric Point: 6.1699

>NTDB_id=408668 GPY01_RS07585 WP_032470830.1 692689..694113(+) (sbcB) [Vibrio cholerae strain 2011EL-1271]
MQQKHQPTFFFFDYETWGVNPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQLPNDYLPAPEAALITGITPQKANSQGLAEP
EFIARIHAELSTPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQHGNSRWDLLDVLRACHALRPEGIEWPENDDGFT
SFKLEHLSVANGIEHSNAHDAMADVIATIELAKKVKAAQPKLFDYFFTMRHKRKLTELIDIVNQTPLMHVSGMLGRERHY
TSWIVPIAWHPTNQNAVIVVDLGKDPQPLLELDAETLQARLYTRYEDLAPDELPVPVKLVHLNKCPILAPAKTLTAENAQ
KIGIDREQCLAHLNVIRQHPEIREKLVTVFSQEREFNQESDVDSQLYAGFFSPADRAAMEIIRTTAPENLGSLAIQVADK
RIEPLLFRYRARHYPHTLTDAEQRRWAAHCRDYFERNLEGYMLNLENLVHEHQADPKKMAILKSVYHYVEKLAC

Nucleotide

• Length: 1425 bp

>NTDB_id=408668 GPY01_RS07585 WP_032470830.1 692689..694113(+) (sbcB) [Vibrio cholerae strain 2011EL-1271]
ATGCAGCAAAAACACCAGCCCACATTCTTCTTCTTTGACTACGAGACTTGGGGAGTCAATCCCGCCAAAGATCGTCCTAG
TCAGTTTGCGGGTGTGCGTACCGATATGGACTTCAACATCATCGGTGAGCCTTTGGTAATTTACTGTCAGCTGCCCAACG
ACTATTTGCCCGCCCCTGAGGCCGCATTGATCACAGGGATCACCCCTCAAAAAGCCAATAGCCAAGGTCTCGCGGAGCCC
GAATTTATCGCGCGTATTCATGCAGAACTCTCCACACCAAACACCACTAGCCTTGGCTATAACAGCATACGTTTTGATGA
TGAAGTGACGCGCTACACCTGCTATCGCAACTTTATCGACCCCTATGCTTGGAGCTGGCAACACGGCAATTCCCGTTGGG
ATCTGCTGGATGTGCTTCGCGCGTGTCATGCTTTGCGTCCTGAAGGTATCGAGTGGCCGGAAAATGATGACGGCTTCACC
AGCTTTAAACTGGAACATCTTTCTGTTGCCAACGGCATTGAGCACAGCAACGCGCACGATGCGATGGCCGATGTGATTGC
CACCATTGAACTGGCGAAAAAAGTCAAAGCCGCGCAGCCGAAATTGTTCGACTACTTCTTCACTATGCGCCACAAACGCA
AACTGACAGAACTGATTGATATTGTGAACCAAACTCCGCTGATGCATGTTTCTGGCATGCTTGGGCGTGAGCGCCACTAC
ACCAGCTGGATTGTGCCGATTGCTTGGCATCCGACCAATCAAAATGCGGTGATTGTGGTGGATTTGGGTAAAGACCCTCA
GCCGCTGCTGGAGCTTGATGCCGAAACGCTGCAAGCGCGTCTCTATACGCGGTATGAAGACCTAGCGCCGGATGAGCTAC
CAGTACCCGTGAAATTGGTGCATCTCAACAAATGCCCTATTCTGGCTCCGGCCAAAACCTTGACCGCAGAAAATGCACAA
AAGATTGGTATTGACCGCGAACAGTGTCTCGCGCACTTGAATGTGATTCGTCAACACCCCGAGATTCGTGAAAAACTGGT
GACGGTATTTAGCCAAGAGCGCGAGTTTAACCAAGAGAGTGATGTGGATAGCCAACTCTATGCCGGCTTTTTCTCCCCAG
CCGATCGCGCGGCGATGGAGATCATCCGCACCACTGCACCGGAGAATCTGGGCAGCTTAGCGATACAGGTGGCCGATAAG
CGCATTGAACCACTGCTGTTTCGTTATCGTGCGCGCCATTATCCCCATACCTTAACCGATGCCGAGCAACGCCGCTGGGC
AGCGCATTGTCGTGACTATTTCGAGCGCAATCTAGAAGGTTATATGTTGAATTTGGAAAATCTGGTGCATGAACATCAAG
CTGATCCAAAGAAAATGGCGATTCTAAAATCCGTCTACCATTACGTGGAAAAACTCGCTTGCTAA

Domains

Predicted by InterproScan.

• Exonuclease C-terminal (Exonuc_X-T_C) (210-470)

• Exonuclease (RNase_T) (11-191)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
sbcB	Vibrio cholerae O1 biovar El Tor strain E7946	98.945	100	0.989