Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   GPY01_RS02300 Genome accession   NZ_CP046838
Coordinates   528157..529251 (+) Length   364 a.a.
NCBI ID   WP_123161752.1    Uniprot ID   -
Organism   Vibrio cholerae strain 2011EL-1271     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 523157..534251
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY01_RS02265 - 524317..524568 (-) 252 WP_001882582.1 YgjV family protein -
  GPY01_RS02275 - 524981..525301 (-) 321 WP_001089529.1 DUF496 family protein -
  GPY01_RS02280 - 525489..525686 (+) 198 WP_001246069.1 hypothetical protein -
  GPY01_RS02285 - 525728..526378 (+) 651 WP_001025630.1 YceH family protein -
  GPY01_RS02290 - 526378..526683 (+) 306 WP_000448828.1 GIY-YIG nuclease family protein -
  GPY01_RS02295 traF 526785..527945 (+) 1161 WP_001025858.1 conjugal transfer protein TraF -
  GPY01_RS02300 luxP 528157..529251 (+) 1095 WP_123161752.1 substrate-binding domain-containing protein Regulator
  GPY01_RS02305 luxQ 529269..531842 (+) 2574 WP_123161753.1 quorum-sensing autoinducer 2 sensor kinase/phosphatase LuxQ Regulator
  GPY01_RS02310 - 531834..532499 (-) 666 WP_000268198.1 flagellar brake protein -
  GPY01_RS02315 - 532743..533261 (-) 519 WP_000914961.1 hypothetical protein -
  GPY01_RS02320 - 533499..533897 (-) 399 WP_000831416.1 YgiW/YdeI family stress tolerance OB fold protein -

Sequence

Protein


Download         Length: 364 a.a.        Molecular weight: 41256.93 Da        Isoelectric Point: 6.3129

>NTDB_id=408660 GPY01_RS02300 WP_123161752.1 528157..529251(+) (luxP) [Vibrio cholerae strain 2011EL-1271]
MKRKLISPLFLIAALFSSTAQADSLKGYWHYDEFLAEFPEQRPISELFAQTVRDKPSALTVAQEQPVIISVVYPGQQISD
YWVRNIKAFEKRMDALGIRYQINQVFTRPNLDTRQQSVSLMEALKNKSDYLIFTLDTTRHRKFIEHVLHSSETKLILQNI
TTPVKDWQGKQPMMYIGFDHEYGAQLLAQYYQAHAPKKPYSVLYFSEGYISEARGDTFIQDMNAIHHFPLASSYYTKATE
QSGYEATLNIVKNNPEIGFIYACATDVALGAAQALKELNRQDIMVNGWGGGSAELEALAKGELDVTVMRMNDDTGVAMAE
AIKWDLEGKTVPLVYSGDFEVVTKQDSAARIAELKARAFRYSDR

Nucleotide


Download         Length: 1095 bp        

>NTDB_id=408660 GPY01_RS02300 WP_123161752.1 528157..529251(+) (luxP) [Vibrio cholerae strain 2011EL-1271]
ATGAAAAGAAAGCTAATATCTCCGCTGTTTCTGATAGCAGCACTCTTCAGCTCAACTGCTCAAGCCGATTCATTAAAAGG
CTATTGGCATTATGATGAATTTCTTGCTGAGTTCCCTGAACAGCGGCCAATTTCCGAGCTTTTTGCTCAAACAGTTCGTG
ATAAACCGAGTGCGTTGACGGTGGCGCAAGAACAACCCGTTATTATCTCAGTGGTCTATCCCGGACAGCAAATTTCCGAC
TATTGGGTTCGCAACATCAAAGCGTTTGAAAAGCGAATGGATGCTTTGGGGATTCGCTATCAAATCAATCAGGTGTTTAC
TCGCCCGAATCTTGATACTCGCCAGCAGAGTGTTTCTTTGATGGAAGCGCTCAAAAATAAGAGTGACTATCTGATCTTTA
CCTTAGATACCACCCGTCACCGCAAATTCATTGAACATGTGCTGCACTCTTCTGAAACCAAGTTGATTTTGCAAAATATC
ACGACACCAGTGAAAGATTGGCAAGGTAAGCAGCCTATGATGTACATCGGCTTTGATCATGAGTACGGCGCGCAATTATT
AGCGCAATATTACCAAGCACATGCCCCTAAAAAGCCTTATTCAGTACTCTATTTTTCCGAGGGATATATCAGTGAAGCAC
GAGGGGATACCTTCATCCAAGATATGAATGCGATACACCATTTTCCGTTGGCTTCTTCCTATTACACTAAGGCAACCGAA
CAAAGTGGCTATGAAGCGACCCTAAACATCGTCAAGAATAATCCAGAAATTGGCTTTATTTACGCCTGTGCGACGGACGT
GGCTTTGGGAGCTGCGCAGGCACTGAAAGAGCTGAACCGACAAGATATTATGGTCAATGGTTGGGGCGGAGGCTCGGCTG
AATTGGAAGCGCTTGCTAAAGGCGAGTTGGATGTCACTGTAATGCGCATGAATGACGATACGGGTGTGGCGATGGCCGAA
GCGATTAAATGGGATTTGGAAGGAAAAACCGTACCTTTGGTCTATTCAGGCGATTTTGAAGTGGTCACCAAACAAGATTC
AGCAGCACGTATTGCTGAACTGAAAGCTCGGGCTTTCCGTTATTCGGATCGTTAG

Domains

Predicted by InterproScan.

Periplasmic binding protein domain (Peripla_BP_4)

(69-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

98.901

100

0.989

Multiple sequence alignment