Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   GPY41_RS18485 Genome accession   NZ_CP046835
Coordinates   2263424..2263942 (-) Length   172 a.a.
NCBI ID   WP_011079537.1    Uniprot ID   Q7MHS7
Organism   Vibrio vulnificus strain 07-2444     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2258424..2268942
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY41_RS18460 rimM 2258486..2259034 (-) 549 WP_038941427.1 ribosome maturation factor RimM -
  GPY41_RS18465 rpsP 2259050..2259298 (-) 249 WP_011079541.1 30S ribosomal protein S16 -
  GPY41_RS18470 ffh 2259587..2260963 (-) 1377 WP_011079540.1 signal recognition particle protein -
  GPY41_RS18475 - 2261177..2261971 (+) 795 WP_158123817.1 inner membrane protein YpjD -
  GPY41_RS18480 - 2262058..2263335 (+) 1278 WP_158123818.1 HlyC/CorC family transporter -
  GPY41_RS18485 luxS 2263424..2263942 (-) 519 WP_011079537.1 S-ribosylhomocysteine lyase Regulator
  GPY41_RS18490 - 2263993..2264598 (-) 606 WP_233263908.1 hypothetical protein -
  GPY41_RS18495 gshA 2264636..2266201 (-) 1566 WP_158123819.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18899.69 Da        Isoelectric Point: 5.2384

>NTDB_id=408636 GPY41_RS18485 WP_011079537.1 2263424..2263942(-) (luxS) [Vibrio vulnificus strain 07-2444]
MPLLDSFTVDHTRMHAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRKHLNGASVEIIDISP
MGCRTGFYMSLIGAPSEQDVASAWTASMEDVLKVESQNKIPELNEYQCGTAAMHSLDEAKQIAQNILAAGISVNKNDELA
LPEAMLKELKVD

Nucleotide


Download         Length: 519 bp        

>NTDB_id=408636 GPY41_RS18485 WP_011079537.1 2263424..2263942(-) (luxS) [Vibrio vulnificus strain 07-2444]
ATGCCATTATTAGATAGTTTTACCGTTGACCACACTCGTATGCATGCACCCGCGGTGCGTGTGGCAAAAACCATGCAGAC
GCCAAAAGGCGACACCATTACCGTGTTTGACTTACGTTTCACTGCACCTAACAAAGATATTTTGTCAGAGAAAGGCATTC
ACACTTTGGAGCACCTGTACGCAGGCTTTATGCGTAAGCATCTTAATGGCGCATCGGTTGAGATCATCGATATCTCACCG
ATGGGTTGTCGTACCGGTTTCTACATGAGCTTAATTGGTGCGCCGAGTGAGCAAGACGTGGCATCTGCGTGGACGGCTTC
GATGGAAGATGTGTTGAAAGTGGAAAGCCAAAACAAGATCCCTGAGTTGAACGAGTATCAGTGCGGTACCGCAGCCATGC
ACTCGCTAGATGAAGCGAAGCAAATCGCACAAAACATTCTGGCAGCAGGAATTTCGGTGAATAAAAATGATGAACTGGCA
TTGCCAGAAGCGATGTTGAAAGAGCTCAAAGTGGATTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q7MHS7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

87.135

99.419

0.866

Multiple sequence alignment