Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   GPY41_RS11220 Genome accession   NZ_CP046835
Coordinates   838956..840377 (-) Length   473 a.a.
NCBI ID   WP_011150112.1    Uniprot ID   A0AAN1UC63
Organism   Vibrio vulnificus strain 07-2444     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 833956..845377
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY41_RS11190 - 834347..835114 (+) 768 WP_017790525.1 phospholipase A -
  GPY41_RS11195 - 835353..835742 (+) 390 WP_017419941.1 hypothetical protein -
  GPY41_RS11200 - 835836..836939 (-) 1104 WP_158123253.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -
  GPY41_RS11205 - 837142..837534 (-) 393 WP_017790523.1 SulA-like leucine-rich domain-containing protein -
  GPY41_RS11210 - 837858..838535 (-) 678 WP_017790522.1 LrgB family protein -
  GPY41_RS11215 - 838538..838909 (-) 372 WP_158123254.1 CidA/LrgA family protein -
  GPY41_RS11220 sbcB 838956..840377 (-) 1422 WP_011150112.1 exodeoxyribonuclease I Machinery gene
  GPY41_RS11225 - 840451..841149 (-) 699 WP_158123255.1 oxidoreductase -
  GPY41_RS11230 cobT 841688..842716 (+) 1029 WP_130252719.1 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase -
  GPY41_RS11235 - 842718..843485 (+) 768 WP_158123256.1 adenosylcobinamide-GDP ribazoletransferase -
  GPY41_RS11240 cobU 843488..844048 (+) 561 WP_199252213.1 bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase -
  GPY41_RS11245 cobC 844058..844696 (+) 639 WP_053542685.1 alpha-ribazole phosphatase -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 54741.99 Da        Isoelectric Point: 5.1722

>NTDB_id=408626 GPY41_RS11220 WP_011150112.1 838956..840377(-) (sbcB) [Vibrio vulnificus strain 07-2444]
MQQDNQPTFFFFDYETWGTSPAKDRPSQFAGVRTDENFNIIGEPLVIYCRPPADYLPAPEAALITGITPQKAQKEGLPEP
EFIAKIHAELSRPNTTSLGYNSIRFDDEVTRYTCYRNFLDPYSWSWQNGNSRWDLLDVMRACHALRPEGVEWPENEEGFT
SFKLEHLSVANGIEHSNAHDAMADVIATIEMAKKVKAAQPKLFDYFFSMRHKRKLNELIDIVNMTPLMHVSGMLGRECQY
TSWIVPLAWHPTNNNAVIVVDLAKDPQPLFDLDADALHERLYTRHDELGDLLPVPVKLVHLNKCPILAPAKTLTAENAAN
IGIDREQCLANLALIRQHPEVREKLVQLFSIEREFEKSHDVDTLLYDGFFSPADKASMDIIRQTDPTHLAALDITFNDKR
IEPLLFRYRARNYPWTLDENEQRRWANHCREYFESRIEEYMLNLENLVHEHESDEKKMAILKSVYRYTESLIS

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=408626 GPY41_RS11220 WP_011150112.1 838956..840377(-) (sbcB) [Vibrio vulnificus strain 07-2444]
ATGCAGCAAGACAATCAGCCCACTTTCTTCTTTTTTGACTATGAGACTTGGGGAACCAGTCCAGCAAAAGATCGCCCATC
GCAATTTGCTGGCGTTCGTACCGATGAAAACTTCAATATCATCGGCGAACCATTGGTGATTTATTGTCGCCCACCTGCCG
ATTATTTACCGGCCCCCGAAGCCGCGCTCATTACCGGAATTACGCCACAAAAAGCGCAGAAAGAAGGCTTACCCGAGCCA
GAATTTATCGCAAAAATCCACGCAGAATTGTCGCGTCCGAACACCACAAGCCTTGGCTACAACAGCATTCGCTTCGATGA
CGAAGTCACGCGTTATACCTGCTATCGCAATTTCCTCGATCCCTATTCATGGAGCTGGCAAAACGGCAATTCACGCTGGG
ATCTGCTTGATGTGATGCGAGCTTGTCACGCATTAAGACCGGAAGGGGTGGAATGGCCGGAAAATGAAGAAGGCTTTACC
AGCTTTAAACTGGAGCACCTTTCTGTGGCCAATGGCATTGAACACAGTAACGCCCATGATGCGATGGCCGATGTGATCGC
CACCATTGAAATGGCGAAAAAAGTCAAAGCCGCGCAACCCAAATTGTTTGATTACTTCTTTAGCATGCGCCATAAGCGTA
AGCTCAATGAGTTGATCGATATTGTTAACATGACCCCTTTGATGCATGTCTCTGGCATGTTAGGCCGTGAATGCCAATAC
ACCAGTTGGATAGTGCCGTTAGCTTGGCACCCGACCAACAACAATGCGGTGATTGTGGTCGACTTAGCCAAAGATCCTCA
ACCCCTCTTTGATTTGGATGCCGATGCGCTGCATGAGCGTCTTTACACTCGTCATGATGAGCTCGGCGACTTATTGCCTG
TGCCAGTTAAATTGGTGCATTTGAATAAGTGCCCGATTTTAGCACCAGCCAAAACCCTCACTGCGGAGAACGCCGCCAAT
ATCGGCATCGACCGAGAACAATGTTTGGCAAACTTAGCCCTTATTCGCCAGCATCCAGAAGTGCGAGAAAAGTTGGTGCA
GCTGTTCTCAATTGAACGCGAGTTCGAGAAAAGTCATGATGTCGATACCCTGTTGTACGACGGTTTCTTCTCGCCTGCCG
ACAAAGCCTCGATGGACATTATCCGCCAAACCGATCCAACGCACCTTGCCGCTTTGGACATCACGTTTAACGATAAACGC
ATCGAGCCGCTGCTGTTTCGCTACCGTGCGCGCAATTACCCATGGACGTTGGATGAGAACGAACAGCGCCGTTGGGCGAA
TCATTGCCGCGAATACTTCGAAAGTCGAATTGAAGAGTACATGCTTAATTTGGAAAACTTAGTTCACGAACATGAAAGTG
ACGAAAAGAAAATGGCGATATTAAAATCCGTGTACCGCTATACTGAGAGCTTGATCTCATAA

Domains

Predicted by InterproScan.

Exonuclease C-terminal (Exonuc_X-T_C)

(210-469)

Exonuclease (RNase_T)

(11-190)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

80.72

99.789

0.805

Multiple sequence alignment