Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   GPY41_RS06825 Genome accession   NZ_CP046834
Coordinates   1618673..1619773 (-) Length   366 a.a.
NCBI ID   WP_080539343.1    Uniprot ID   -
Organism   Vibrio vulnificus strain 07-2444     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 1613673..1624773
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY41_RS06805 - 1613736..1614197 (-) 462 WP_011081676.1 Lrp/AsnC family transcriptional regulator -
  GPY41_RS06810 - 1614345..1615319 (+) 975 WP_158122852.1 DMT family transporter -
  GPY41_RS06815 - 1615447..1616106 (+) 660 WP_011152472.1 PilZ domain-containing protein -
  GPY41_RS06820 luxQ 1616103..1618676 (-) 2574 WP_017791111.1 quorum-sensing autoinducer 2 sensor kinase/phosphatase LuxQ -
  GPY41_RS06825 luxP 1618673..1619773 (-) 1101 WP_080539343.1 autoinducer 2-binding periplasmic protein LuxP Regulator
  GPY41_RS06830 traF 1619961..1621130 (-) 1170 WP_199252118.1 conjugal transfer protein TraF -
  GPY41_RS06835 - 1621207..1621503 (-) 297 WP_130247227.1 GIY-YIG nuclease family protein -
  GPY41_RS06840 - 1621503..1622165 (-) 663 WP_158122856.1 YceH family protein -
  GPY41_RS06845 - 1622231..1622440 (-) 210 WP_017421653.1 hypothetical protein -
  GPY41_RS06850 - 1622710..1623024 (+) 315 WP_011081685.1 DUF496 family protein -
  GPY41_RS06855 - 1623195..1624523 (+) 1329 WP_158122858.1 MATE family efflux transporter -

Sequence

Protein


Download         Length: 366 a.a.        Molecular weight: 41353.88 Da        Isoelectric Point: 6.7732

>NTDB_id=408616 GPY41_RS06825 WP_080539343.1 1618673..1619773(-) (luxP) [Vibrio vulnificus strain 07-2444]
MKKILLTCLLASASFHVSSHTSEVLSGYWAYQEFLEKFPQQGVLTRELSQVVRNAPVPLKRHQSKPIRISVVFPGQQISD
YWVRNLSAFEKRMDKLQISYQINQVFTRPNADVKQQSVSLMEALKSKSDYLIFTLDTTRHRKFIEHVLDSSETKLILQNI
TTPVQAWDKRQPFLYVGFDHAEGSIALADKFKQLYPQGANYSVLYFSEGYVSDARGDTFIHQMNHSDRFALKSSFYTKAT
KASGYESAINSLERYPDVDFIYACSTDVALGAIDALKDLGRTNIKINGWGGGSAELDAIAAGDLDLTVMRMNDDTGIAMA
EAIKWDIEGRTVPTVFSGDFEVVTKDDSPEHIELLKKRAFRYSDQP

Nucleotide


Download         Length: 1101 bp        

>NTDB_id=408616 GPY41_RS06825 WP_080539343.1 1618673..1619773(-) (luxP) [Vibrio vulnificus strain 07-2444]
ATGAAAAAGATATTACTAACTTGTTTATTAGCGTCAGCAAGTTTTCATGTAAGCTCACATACGTCAGAAGTCCTCAGTGG
CTACTGGGCTTATCAAGAATTTTTGGAAAAATTTCCTCAACAAGGCGTGCTCACACGAGAACTGTCTCAGGTGGTTAGGA
ATGCGCCTGTGCCTTTAAAGCGTCATCAATCCAAGCCGATACGAATTTCAGTGGTATTTCCTGGTCAGCAGATCTCCGAT
TACTGGGTAAGAAATCTTTCCGCGTTTGAGAAACGCATGGATAAGCTGCAGATCAGTTACCAAATCAATCAGGTTTTCAC
GCGGCCAAATGCCGATGTTAAGCAGCAAAGCGTTTCCTTGATGGAAGCGTTAAAGAGCAAATCGGATTACCTCATTTTTA
CGCTCGATACGACGCGCCACCGCAAGTTCATTGAGCATGTATTAGACTCTTCCGAAACCAAGCTGATCCTGCAAAATATC
ACCACACCAGTTCAAGCCTGGGACAAAAGACAGCCATTTCTCTACGTCGGTTTTGACCATGCAGAAGGGAGCATTGCGCT
GGCCGATAAGTTTAAACAACTCTACCCACAAGGTGCAAATTACTCGGTTCTCTACTTTTCAGAAGGTTATGTGAGTGATG
CTCGTGGTGACACCTTTATACATCAGATGAATCACAGTGACCGATTTGCCCTAAAAAGCTCTTTTTACACCAAAGCGACC
AAGGCCTCAGGCTATGAGTCCGCAATAAACAGTTTAGAGCGCTATCCTGATGTGGATTTTATCTACGCCTGTTCTACCGA
TGTGGCCCTTGGTGCCATTGATGCATTGAAAGATCTGGGGCGCACAAACATCAAGATCAATGGATGGGGTGGTGGTTCTG
CTGAGCTTGACGCAATCGCGGCAGGTGATCTTGATTTGACAGTAATGCGCATGAACGATGATACAGGAATCGCTATGGCT
GAGGCGATCAAATGGGACATAGAAGGAAGAACCGTCCCGACCGTCTTTTCTGGCGACTTTGAAGTGGTGACAAAAGATGA
CTCGCCAGAACACATCGAACTATTGAAAAAACGCGCGTTTAGATATTCAGATCAGCCATGA

Domains

Predicted by InterproScan.

Periplasmic binding protein domain (Peripla_BP_4)

(69-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

64.11

99.727

0.639

Multiple sequence alignment