Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   GPY16_RS18850 Genome accession   NZ_CP046833
Coordinates   913794..914894 (-) Length   366 a.a.
NCBI ID   WP_017421657.1    Uniprot ID   A0A2S3SAB2
Organism   Vibrio vulnificus strain 06-2410     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 908794..919894
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY16_RS18830 - 908829..909290 (-) 462 WP_011081676.1 Lrp/AsnC family transcriptional regulator -
  GPY16_RS18835 - 909438..910412 (+) 975 WP_039546927.1 DMT family transporter -
  GPY16_RS18840 - 910568..911227 (+) 660 WP_017421659.1 PilZ domain-containing protein -
  GPY16_RS18845 luxQ 911224..913797 (-) 2574 WP_158105833.1 quorum-sensing autoinducer 2 sensor kinase/phosphatase LuxQ -
  GPY16_RS18850 luxP 913794..914894 (-) 1101 WP_017421657.1 autoinducer 2-binding periplasmic protein LuxP Regulator
  GPY16_RS18855 traF 915082..916251 (-) 1170 WP_026050679.1 conjugal transfer protein TraF -
  GPY16_RS18860 - 916328..916624 (-) 297 WP_017421655.1 GIY-YIG nuclease family protein -
  GPY16_RS18865 - 916624..917286 (-) 663 WP_039447168.1 YceH family protein -
  GPY16_RS18870 - 917352..917561 (-) 210 WP_017421653.1 hypothetical protein -
  GPY16_RS18875 - 917831..918145 (+) 315 WP_011081685.1 DUF496 family protein -
  GPY16_RS18880 - 918315..919643 (+) 1329 WP_103196322.1 MATE family efflux transporter -

Sequence

Protein


Download         Length: 366 a.a.        Molecular weight: 41367.91 Da        Isoelectric Point: 6.7734

>NTDB_id=408612 GPY16_RS18850 WP_017421657.1 913794..914894(-) (luxP) [Vibrio vulnificus strain 06-2410]
MKKILLTCLLASASFHVSSHTSEVLSGYWAYQEFLEKFPQQGVLTRELSQVVRNAPVPLKRHQSKPIRISVVFPGQQISD
YWVRNLSAFEKRMDKLQISYQINQVFTRPNADVKQQSVSLMEALKSKSDYLIFTLDTTRHRKFIEHVLDSSETKLILQNI
TTPVQAWDKRQPFLYVGFDHAEGSIALADKFKQLYPQGANYSVLYFSEGYVSDARGDTFIHQMNHSDRFALKSSFYTKAT
KASGYESAINSLERYPDVDFIYACSTDVALGAIDALKDLGRTNIKINGWGGGSAELDAIAAGDLDLTVMRMNDDTGIAMA
EAIKWDIEGRTVPTVFSGDFEVVTKEDSPEHIELLKKRAFRYSDQP

Nucleotide


Download         Length: 1101 bp        

>NTDB_id=408612 GPY16_RS18850 WP_017421657.1 913794..914894(-) (luxP) [Vibrio vulnificus strain 06-2410]
ATGAAAAAGATATTACTAACTTGTTTATTAGCGTCAGCAAGTTTTCATGTAAGCTCACATACGTCAGAAGTCCTCAGTGG
GTACTGGGCTTATCAAGAATTTTTGGAAAAATTTCCTCAACAAGGCGTGCTTACACGAGAACTGTCTCAGGTGGTTAGGA
ATGCGCCTGTGCCTTTAAAGCGTCATCAATCCAAGCCGATACGAATTTCAGTGGTATTTCCTGGTCAGCAGATCTCCGAT
TACTGGGTAAGAAATCTTTCTGCGTTTGAGAAACGCATGGATAAGCTGCAGATCAGTTACCAAATCAATCAGGTTTTCAC
GCGGCCAAATGCCGATGTTAAGCAGCAAAGCGTTTCCTTGATGGAAGCGTTAAAGAGCAAATCGGATTACCTCATTTTTA
CGCTCGATACGACGCGCCACCGCAAGTTCATTGAGCATGTATTAGACTCTTCCGAAACCAAGCTGATCCTGCAAAATATC
ACCACACCAGTTCAAGCCTGGGACAAAAGACAGCCATTTCTCTACGTCGGCTTTGACCATGCAGAAGGGAGTATTGCGCT
GGCCGATAAGTTTAAACAGCTCTACCCACAAGGTGCAAATTACTCGGTTCTCTACTTTTCAGAAGGTTATGTGAGTGATG
CTCGTGGTGACACCTTTATACATCAGATGAATCACAGTGACCGATTTGCCCTAAAAAGCTCTTTTTACACCAAAGCGACC
AAGGCCTCAGGCTATGAGTCCGCAATAAACAGTTTAGAGCGCTATCCTGATGTGGATTTTATCTACGCCTGTTCTACCGA
TGTGGCCCTTGGTGCCATTGATGCATTGAAAGATCTGGGTCGCACAAACATCAAGATCAATGGATGGGGTGGTGGTTCTG
CTGAGCTTGACGCGATCGCGGCAGGTGATCTTGATTTGACAGTTATGCGCATGAACGATGATACAGGAATCGCTATGGCT
GAGGCGATCAAATGGGACATTGAAGGAAGAACCGTCCCGACCGTCTTTTCTGGCGACTTTGAAGTGGTGACAAAAGAGGA
CTCGCCAGAACACATCGAACTATTGAAAAAACGCGCGTTTAGATATTCAGATCAGCCATGA

Domains

Predicted by InterproScan.

Periplasmic binding protein domain (Peripla_BP_4)

(69-322)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2S3SAB2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

64.11

99.727

0.639

Multiple sequence alignment