Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   GPY16_RS08790 Genome accession   NZ_CP046832
Coordinates   1871919..1873340 (+) Length   473 a.a.
NCBI ID   WP_158105283.1    Uniprot ID   -
Organism   Vibrio vulnificus strain 06-2410     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1866919..1878340
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY16_RS08765 cobC 1867604..1868242 (-) 639 WP_158105280.1 alpha-ribazole phosphatase -
  GPY16_RS08770 cobU 1868252..1868809 (-) 558 WP_199244970.1 bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase -
  GPY16_RS08775 - 1868812..1869579 (-) 768 WP_158105282.1 adenosylcobinamide-GDP ribazoletransferase -
  GPY16_RS08780 cobT 1869581..1870609 (-) 1029 WP_102982762.1 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase -
  GPY16_RS08785 - 1871147..1871845 (+) 699 WP_039547418.1 oxidoreductase -
  GPY16_RS08790 sbcB 1871919..1873340 (+) 1422 WP_158105283.1 exodeoxyribonuclease I Machinery gene
  GPY16_RS08795 - 1873386..1873757 (+) 372 WP_045588948.1 CidA/LrgA family protein -
  GPY16_RS08800 - 1873760..1874437 (+) 678 WP_038963115.1 LrgB family protein -
  GPY16_RS08805 - 1874750..1875142 (+) 393 WP_017419943.1 SulA-like leucine-rich domain-containing protein -
  GPY16_RS08810 - 1875345..1876448 (+) 1104 WP_017790524.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -
  GPY16_RS08815 - 1876543..1876932 (-) 390 WP_017419941.1 hypothetical protein -
  GPY16_RS08820 - 1877173..1877940 (-) 768 WP_158105284.1 phospholipase A -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 54757.99 Da        Isoelectric Point: 5.1722

>NTDB_id=408598 GPY16_RS08790 WP_158105283.1 1871919..1873340(+) (sbcB) [Vibrio vulnificus strain 06-2410]
MQQDNQPTFFFFDYETWGTSPAKDRPSQFAGVRTDENFNIIGEPLVIYCRPPADYLPAPEAALITGITPQKAQKEGLPEP
EFIAKIHAELSRPNTTSLGYNSIRFDDEVTRYTCYRNFLDPYSWSWQNGNSRWDLLDVMRACHALRPEGVEWPENEEGFT
SFKLEHLSVANGIEHSNAHDAMADVIATIEMAKKVKAAQPKLFDYFFSMRHKRKLNELIDIVNMTPLMHVSGMLGRECQY
TSWIVPLAWHPTNNNAVIVVDLAKDPQPLFDLDADALHERLYTRHDELGDLLPVPVKLVHLNKCPILAPAKTLTAENATN
IGIDREQCLANLALIRQHPEVREKLVQLFSVEREFEKSHDVDTLLYDGFFSPADKASMDIIRQTDPTHLAALDITFNDKR
IEPLLFRYRARNYPWTLDENEQRRWANHCREYFESRIEEYMLNLENLVHEHESDEKKMAILKSVYRYTESLIS

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=408598 GPY16_RS08790 WP_158105283.1 1871919..1873340(+) (sbcB) [Vibrio vulnificus strain 06-2410]
ATGCAGCAAGACAATCAGCCCACTTTCTTCTTTTTTGACTATGAGACTTGGGGAACCAGCCCAGCAAAAGATCGTCCATC
GCAATTTGCTGGCGTTCGTACCGATGAAAACTTCAATATCATCGGCGAGCCATTGGTGATTTATTGTCGCCCACCTGCCG
ATTATTTACCGGCCCCCGAAGCCGCACTCATTACCGGAATTACGCCGCAAAAAGCGCAGAAAGAAGGCTTACCAGAGCCA
GAATTCATCGCTAAAATCCACGCAGAGTTGTCGCGCCCGAACACCACGAGCCTCGGCTACAACAGTATTCGCTTCGATGA
CGAAGTCACGCGTTACACCTGCTATCGCAATTTCCTCGATCCCTATTCATGGAGCTGGCAAAACGGCAATTCACGCTGGG
ATCTGCTTGATGTGATGCGAGCTTGTCACGCATTAAGACCGGAAGGGGTGGAATGGCCGGAAAATGAAGAAGGCTTTACC
AGCTTTAAACTGGAGCACCTTTCGGTGGCGAATGGCATTGAACACAGCAACGCGCATGATGCGATGGCCGATGTGATCGC
CACCATCGAAATGGCGAAAAAAGTCAAAGCCGCGCAACCCAAATTGTTTGATTACTTTTTTAGCATGCGCCATAAGCGTA
AACTCAATGAGTTGATCGATATTGTTAACATGACCCCTTTGATGCATGTCTCTGGCATGTTAGGCCGTGAATGCCAGTAC
ACCAGTTGGATTGTGCCGTTAGCTTGGCACCCGACCAACAACAATGCGGTGATTGTGGTCGACTTAGCCAAAGATCCTCA
ACCCCTCTTCGATTTGGATGCCGATGCGCTGCATGAGCGTCTTTACACACGTCATGATGAGCTGGGTGACTTACTGCCTG
TGCCAGTTAAACTGGTGCATTTGAATAAGTGCCCGATTTTAGCTCCCGCCAAAACCCTCACAGCGGAGAACGCCACCAAT
ATCGGCATCGACCGAGAACAATGTTTGGCAAACTTAGCCCTTATTCGCCAGCACCCAGAAGTGCGAGAAAAGTTGGTGCA
GCTGTTCTCAGTTGAACGCGAGTTTGAGAAAAGTCATGATGTCGATACCCTGTTGTACGACGGTTTCTTCTCGCCTGCCG
ACAAAGCCTCGATGGACATTATCCGCCAAACCGATCCAACTCACCTTGCCGCTTTGGACATCACGTTCAACGATAAACGC
ATCGAACCGCTGCTGTTTCGCTACCGCGCGCGCAATTACCCATGGACGTTGGATGAGAACGAACAGCGCCGTTGGGCGAA
TCATTGCCGCGAATACTTCGAAAGTCGAATTGAAGAGTACATGCTTAATTTGGAAAACTTAGTTCACGAACATGAAAGTG
ACGAAAAGAAAATGGCGATATTAAAATCCGTGTACCGCTATACTGAGAGCTTGATCTCATAA

Domains

Predicted by InterproScan.

Exonuclease C-terminal (Exonuc_X-T_C)

(210-469)

Exonuclease (RNase_T)

(11-190)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

80.72

99.789

0.805

Multiple sequence alignment