Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   GPY16_RS02040 Genome accession   NZ_CP046832
Coordinates   415706..416713 (-) Length   335 a.a.
NCBI ID   WP_011079334.1    Uniprot ID   -
Organism   Vibrio vulnificus strain 06-2410     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 410706..421713
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY16_RS02010 zapB 410844..411086 (-) 243 WP_017789752.1 cell division protein ZapB -
  GPY16_RS02015 rraA 411308..411820 (-) 513 WP_017419637.1 ribonuclease E activity regulator RraA -
  GPY16_RS02020 - 411896..412813 (-) 918 WP_017419638.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -
  GPY16_RS02025 hslU 412978..414309 (-) 1332 WP_045609943.1 HslU--HslV peptidase ATPase subunit -
  GPY16_RS02030 hslV 414337..414891 (-) 555 WP_017419639.1 ATP-dependent protease subunit HslV -
  GPY16_RS02035 - 415041..415598 (-) 558 WP_017419640.1 SPOR domain-containing protein -
  GPY16_RS02040 cytR 415706..416713 (-) 1008 WP_011079334.1 DNA-binding transcriptional regulator CytR Regulator
  GPY16_RS02045 priA 416942..419146 (-) 2205 WP_045591349.1 primosomal protein N' -
  GPY16_RS02050 rpmE 419427..419648 (+) 222 WP_011079336.1 50S ribosomal protein L31 -
  GPY16_RS02055 - 419927..421204 (+) 1278 WP_011079337.1 malic enzyme-like NAD(P)-binding protein -
  GPY16_RS02060 metJ 421291..421608 (-) 318 WP_011079338.1 met regulon transcriptional regulator MetJ -

Sequence

Protein


Download         Length: 335 a.a.        Molecular weight: 36842.38 Da        Isoelectric Point: 6.4904

>NTDB_id=408574 GPY16_RS02040 WP_011079334.1 415706..416713(-) (cytR) [Vibrio vulnificus strain 06-2410]
MATMKDVAQLAGVSTATVSRALMNPDKVSATTRKRVEDAVLEAGYSPNSLARNLRRNESRTIVAIVPDICDPYYTEIIRG
IEDAAIEQGYLVLLGDSGQQKRRESSLVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPDLELPTVHIDN
LTSAFEAVNYLTQLGHKRIAQISGPKSAALCQFRQQGYQQALRRAGITMNPQYCVESEFSFEGGAKAIRHLLEMNDAPTA
VFCHCDTMAIGAIQEAKKLGFRVPQDLSIVGFDDIQFAQYCDPPLTTISQPRYEIGRQAMLMMLELLKGHDIHSGSRLLE
TKLVVRGSAAPPGLR

Nucleotide


Download         Length: 1008 bp        

>NTDB_id=408574 GPY16_RS02040 WP_011079334.1 415706..416713(-) (cytR) [Vibrio vulnificus strain 06-2410]
ATGGCGACAATGAAGGATGTTGCCCAGCTTGCAGGAGTTTCAACGGCAACGGTTTCGAGAGCGCTGATGAATCCAGACAA
AGTATCCGCCACAACGCGTAAGCGTGTGGAAGATGCGGTGTTGGAAGCTGGTTATTCCCCAAATTCGCTGGCACGCAATT
TACGCCGCAACGAGTCACGCACTATCGTCGCGATCGTTCCTGACATTTGTGATCCTTACTACACAGAGATCATTCGTGGC
ATTGAAGATGCCGCCATTGAGCAGGGATATTTGGTTCTACTCGGTGACAGCGGCCAACAAAAGCGCCGTGAAAGCTCACT
CGTCAATCTCGTTTTTACCAAGCAAGCGGATGGTATGCTACTGCTTGGTACTGACTTACCTTTTGATGTGAGCAAGCCAG
AACAGAAAAATCTTCCTCCGATGGTCATGGCTTGCGAGTTCGCCCCCGACCTCGAACTGCCGACGGTTCATATCGATAAC
TTGACCTCTGCCTTTGAAGCGGTGAACTACCTGACTCAACTGGGCCACAAACGCATCGCCCAAATTTCAGGGCCAAAATC
CGCAGCACTTTGTCAGTTTAGGCAACAAGGCTATCAACAAGCTTTGCGCCGTGCCGGCATCACAATGAACCCACAATATT
GTGTTGAGTCTGAGTTCTCTTTTGAAGGTGGGGCGAAAGCGATCCGTCATCTGCTAGAAATGAATGATGCGCCAACCGCC
GTCTTCTGTCATTGTGACACCATGGCTATCGGGGCGATTCAAGAAGCGAAAAAATTGGGCTTCCGAGTACCCCAGGATCT
GTCGATTGTCGGCTTCGATGACATCCAGTTCGCCCAATATTGCGATCCTCCGCTAACCACCATCTCACAACCACGCTATG
AGATTGGTCGTCAAGCGATGCTAATGATGTTAGAGCTGCTGAAAGGGCATGACATTCACAGTGGCTCACGCCTACTTGAA
ACCAAATTGGTGGTTCGTGGTAGCGCAGCGCCTCCGGGCTTACGCTAA

Domains

Predicted by InterproScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(168-328)

Bacterial regulatory proteins, lacI family (LacI)

(3-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

89.759

99.104

0.89
  cytR Vibrio cholerae C6706

88.253

99.104

0.875

Multiple sequence alignment