Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   GPY55_RS10950 Genome accession   NZ_CP046831
Coordinates   368513..369031 (+) Length   172 a.a.
NCBI ID   WP_005462534.1    Uniprot ID   Q87LS4
Organism   Vibrio parahaemolyticus strain 2012AW-0224     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 363513..374031
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY55_RS10940 gshA 366248..367816 (+) 1569 WP_015297257.1 glutamate--cysteine ligase -
  GPY55_RS10945 - 367841..368446 (+) 606 WP_023585955.1 hypothetical protein -
  GPY55_RS10950 luxS 368513..369031 (+) 519 WP_005462534.1 S-ribosylhomocysteine lyase Regulator
  GPY55_RS10955 - 369093..370373 (-) 1281 WP_005462557.1 CNNM domain-containing protein -
  GPY55_RS10960 - 370499..371293 (-) 795 WP_005462565.1 inner membrane protein YpjD -
  GPY55_RS10965 ffh 371506..372888 (+) 1383 WP_005462555.1 signal recognition particle protein -
  GPY55_RS10970 rpsP 373098..373346 (+) 249 WP_005379962.1 30S ribosomal protein S16 -
  GPY55_RS10975 rimM 373375..373923 (+) 549 WP_005462552.1 ribosome maturation factor RimM -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19033.73 Da        Isoelectric Point: 4.7134

>NTDB_id=408543 GPY55_RS10950 WP_005462534.1 368513..369031(+) (luxS) [Vibrio parahaemolyticus strain 2012AW-0224]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRNHLNGDSVEIIDISP
MGCRTGFYMSLIGTPSEQQVADAWLASMEDVLKVESQNKIPELNEYQCGTAAMHSLEEAQQIAKNILAAGVSVNKNDELA
LPESMLKELRVD

Nucleotide


Download         Length: 519 bp        

>NTDB_id=408543 GPY55_RS10950 WP_005462534.1 368513..369031(+) (luxS) [Vibrio parahaemolyticus strain 2012AW-0224]
ATGCCTTTACTCGATAGCTTCACCGTAGACCACACTCGCATGAATGCACCAGCAGTGCGTGTCGCGAAAACCATGCAAAC
TCCAAAAGGAGATACCATTACGGTTTTCGACTTACGCTTCACTGCGCCTAACAAAGACATTCTTTCAGAGAAAGGCATTC
ATACACTAGAGCACTTGTACGCAGGTTTCATGCGCAATCACCTAAATGGTGACAGTGTGGAAATCATTGATATCTCCCCG
ATGGGATGTCGCACTGGTTTTTACATGAGTCTCATTGGTACGCCTTCTGAACAGCAAGTTGCAGACGCATGGCTTGCTTC
TATGGAAGATGTGCTAAAAGTGGAAAGCCAGAACAAAATCCCTGAGCTAAATGAGTACCAGTGTGGTACTGCAGCGATGC
ATTCTTTAGAAGAAGCACAGCAAATTGCCAAGAACATTCTAGCCGCAGGTGTGTCTGTTAATAAAAACGACGAGTTGGCT
TTGCCAGAATCAATGCTAAAAGAGCTGCGCGTAGACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87LS4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

88.889

99.419

0.884

Multiple sequence alignment