Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   GPY55_RS09680 Genome accession   NZ_CP046831
Coordinates   126945..127460 (+) Length   171 a.a.
NCBI ID   WP_025517730.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain 2012AW-0224     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 121945..132460
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY55_RS09660 - 122078..124648 (-) 2571 WP_005496567.1 PBP1A family penicillin-binding protein -
  GPY55_RS09665 pilM 124791..125807 (+) 1017 WP_005496568.1 type IV pilus assembly protein PilM Machinery gene
  GPY55_RS09670 pilN 125791..126369 (+) 579 WP_005480484.1 PilN domain-containing protein Machinery gene
  GPY55_RS09675 pilO 126362..126955 (+) 594 WP_005480482.1 type 4a pilus biogenesis protein PilO Machinery gene
  GPY55_RS09680 pilP 126945..127460 (+) 516 WP_025517730.1 pilus assembly protein PilP Machinery gene
  GPY55_RS09685 pilQ 127492..129240 (+) 1749 WP_005488227.1 type IV pilus secretin PilQ family protein Machinery gene
  GPY55_RS09690 aroK 129429..129947 (+) 519 WP_005381319.1 shikimate kinase AroK -
  GPY55_RS09695 aroB 129979..131079 (+) 1101 WP_005480443.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18942.12 Da        Isoelectric Point: 10.5314

>NTDB_id=408533 GPY55_RS09680 WP_025517730.1 126945..127460(+) (pilP) [Vibrio parahaemolyticus strain 2012AW-0224]
MRNKSLLTVLVSALLVGCQANDESLTDFIRGVESQARRDVEKLKPADKYIAVAYAPEVMRAPFELPKEATIATQPVARKD
CWQPPNRARTGKLEKFPLSQLRLKGVMGMGNTVSGLVQAPNGTVYKVKPGQYLGRNNGKVTHVTHSYLLINETLPDGLGC
WQKRKVKLALR

Nucleotide


Download         Length: 516 bp        

>NTDB_id=408533 GPY55_RS09680 WP_025517730.1 126945..127460(+) (pilP) [Vibrio parahaemolyticus strain 2012AW-0224]
ATGAGAAATAAATCTTTGCTGACGGTGTTGGTAAGCGCTCTATTGGTCGGGTGCCAGGCGAATGATGAATCATTAACGGA
TTTTATTCGTGGTGTTGAGAGCCAGGCTCGGCGAGATGTGGAGAAGCTCAAACCTGCTGACAAATACATCGCAGTGGCGT
ATGCCCCAGAAGTGATGCGTGCTCCTTTCGAATTGCCCAAAGAGGCGACCATCGCAACTCAACCTGTGGCGAGAAAAGAT
TGTTGGCAACCGCCGAACCGAGCGAGAACTGGCAAGTTAGAAAAATTCCCACTCAGCCAACTTCGTTTAAAAGGAGTGAT
GGGTATGGGGAACACCGTTTCTGGTTTAGTTCAAGCCCCGAATGGCACGGTTTACAAAGTGAAACCAGGTCAATACCTCG
GACGTAATAACGGTAAGGTCACCCATGTTACCCACTCCTATTTGTTGATTAATGAAACCTTGCCCGATGGTTTGGGGTGC
TGGCAAAAACGTAAAGTTAAGTTGGCTTTGAGATAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(25-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Vibrio campbellii strain DS40M4

84.211

100

0.842
  pilP Vibrio cholerae strain A1552

58.14

100

0.585

Multiple sequence alignment