Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   GPY55_RS06895 Genome accession   NZ_CP046829
Coordinates   1463685..1464866 (+) Length   393 a.a.
NCBI ID   WP_021450908.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain 2012AW-0224     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1458685..1469866
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY55_RS06875 - 1460051..1461049 (+) 999 WP_025498937.1 LysR family transcriptional regulator -
  GPY55_RS06880 - 1461218..1461826 (+) 609 WP_237772387.1 LysR family transcriptional regulator -
  GPY55_RS06885 - 1461813..1462096 (+) 284 Protein_1286 JAB domain-containing protein -
  GPY55_RS06890 ylqF 1462386..1463330 (+) 945 WP_005454328.1 ribosome biogenesis GTPase YlqF -
  GPY55_RS06895 cqsA 1463685..1464866 (+) 1182 WP_021450908.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  GPY55_RS06900 cqsS 1464944..1466992 (-) 2049 WP_021450907.1 hybrid sensor histidine kinase/response regulator Regulator
  GPY55_RS06905 - 1467312..1467608 (+) 297 Protein_1290 HAD family phosphatase -
  GPY55_RS06910 - 1467877..1468041 (+) 165 Protein_1291 helix-turn-helix domain-containing protein -
  GPY55_RS06915 - 1468329..1469205 (+) 877 Protein_1292 IS481 family transposase -

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 43824.14 Da        Isoelectric Point: 6.4984

>NTDB_id=408527 GPY55_RS06895 WP_021450908.1 1463685..1464866(+) (cqsA) [Vibrio parahaemolyticus strain 2012AW-0224]
MCTKNETKPLPSFIEERLNFHIQDLIKSNENQKHLVLGKRPSENAVVMQSNDYLSLSHNELIQKAHRDAISERDDNVVMS
AIFLQDDQSKPAFEHQLATFVGMESCLLSQSGWAANIGLLQTICAPNVPVYIDFFAHMSLWEGARTAGAQIHPFMHNNMN
HLRKQIQRHGAGIIVVDSVYSTIGTIAPLRAIYEMAKEFDCGLVVDESHSLGTHGPKGSGLLQELGLTQMVDFVTVSLAK
TFAYRAGAILGPNKLAQSLPFVAYPAIFSSTVLPQEVVRLEKTLEVIKAADDKRECLFKRAKELAIGLKRIGFNIRSESQ
IIALECGSERNTERVRDFLEERDVFGAVFCRPATGRNKNIIRFSVNADMTAQQVDHVLSACQEAFDHPDLEFV

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=408527 GPY55_RS06895 WP_021450908.1 1463685..1464866(+) (cqsA) [Vibrio parahaemolyticus strain 2012AW-0224]
ATGTGTACTAAAAACGAAACTAAACCACTGCCCTCTTTTATCGAGGAACGCCTTAATTTCCATATTCAAGATTTAATTAA
ATCTAACGAAAATCAAAAACACCTCGTTCTTGGCAAACGACCGTCCGAAAATGCCGTGGTAATGCAAAGCAATGATTACC
TTTCGCTCTCTCACAATGAGCTCATTCAGAAAGCGCATCGAGATGCAATTTCTGAACGAGATGACAATGTCGTGATGTCA
GCAATCTTCTTGCAAGATGATCAATCAAAACCCGCCTTTGAGCACCAGCTAGCGACGTTTGTCGGCATGGAAAGTTGTTT
GTTGTCACAATCAGGATGGGCAGCCAATATTGGTTTACTGCAAACCATCTGCGCGCCAAACGTTCCCGTATACATCGACT
TTTTCGCTCATATGTCGTTGTGGGAAGGAGCACGCACCGCTGGCGCGCAGATTCATCCTTTCATGCACAACAACATGAAT
CATCTGCGCAAGCAGATCCAACGCCACGGTGCGGGCATCATCGTTGTCGATTCGGTGTATAGCACGATTGGCACAATCGC
CCCGTTACGTGCCATCTACGAAATGGCGAAGGAGTTCGATTGTGGCTTAGTGGTAGATGAATCCCATTCATTAGGCACAC
ACGGACCAAAGGGTTCTGGATTATTACAAGAACTGGGACTAACACAGATGGTGGATTTCGTTACCGTAAGTTTGGCTAAA
ACGTTCGCCTACCGCGCTGGTGCGATATTAGGCCCGAACAAGCTAGCACAATCGCTGCCCTTCGTGGCCTATCCTGCGAT
TTTTAGCTCAACGGTTTTGCCGCAAGAAGTCGTGCGTCTAGAAAAAACACTTGAGGTAATTAAAGCGGCTGACGACAAAC
GTGAATGTTTGTTCAAGCGAGCCAAAGAACTCGCCATCGGATTAAAACGTATTGGGTTTAACATTCGCAGCGAATCGCAG
ATTATTGCTCTTGAGTGTGGAAGTGAGAGAAACACTGAACGAGTACGCGATTTCCTTGAAGAAAGAGACGTTTTCGGTGC
GGTGTTTTGTCGACCGGCCACGGGCAGAAACAAGAACATCATTCGATTTTCTGTCAATGCCGACATGACAGCTCAACAAG
TGGATCACGTCTTATCGGCTTGTCAGGAGGCATTTGACCATCCCGACTTAGAATTTGTGTAA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(45-379)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

58.656

98.473

0.578

Multiple sequence alignment