Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   H0S59_RS08560 Genome accession   NZ_CP059078
Coordinates   1835573..1836208 (+) Length   211 a.a.
NCBI ID   WP_004887494.1    Uniprot ID   A0AA36NWB2
Organism   Acinetobacter nosocomialis strain WM98B     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1830573..1841208
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0S59_RS08535 (H0S59_08535) - 1831413..1832426 (+) 1014 WP_004887496.1 aminoglycoside phosphotransferase family protein -
  H0S59_RS08540 (H0S59_08540) murU 1832426..1833115 (+) 690 WP_002049766.1 N-acetylmuramate alpha-1-phosphate uridylyltransferase MurU -
  H0S59_RS08545 (H0S59_08545) rsmG 1833203..1833835 (+) 633 WP_002050181.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  H0S59_RS08550 (H0S59_08550) - 1833857..1834639 (+) 783 WP_002050124.1 ParA family protein -
  H0S59_RS08555 (H0S59_08555) - 1834636..1835523 (+) 888 WP_004709129.1 ParB/RepB/Spo0J family partition protein -
  H0S59_RS08560 (H0S59_08560) exbB 1835573..1836208 (+) 636 WP_004887494.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  H0S59_RS08565 (H0S59_08565) - 1836224..1836652 (+) 429 WP_004887492.1 biopolymer transporter ExbD -
  H0S59_RS08570 (H0S59_08570) msbA 1836649..1838376 (+) 1728 WP_006580783.1 lipid A export permease/ATP-binding protein MsbA -
  H0S59_RS08575 (H0S59_08575) lpxK 1838379..1839389 (+) 1011 WP_004887486.1 tetraacyldisaccharide 4'-kinase -
  H0S59_RS08580 (H0S59_08580) kdsB 1839399..1840160 (+) 762 WP_004887485.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  H0S59_RS08585 (H0S59_08585) - 1840172..1841152 (+) 981 WP_004887483.1 DNA polymerase III subunit delta' -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23135.97 Da        Isoelectric Point: 6.6434

>NTDB_id=408524 H0S59_RS08560 WP_004887494.1 1835573..1836208(+) (exbB) [Acinetobacter nosocomialis strain WM98B]
MWELVKAGGWLMLPLILCSILTVAISIERFIRLRRSQVLPKALMSDGSADISHIITNLEQDTDASSTALGNILKAGFEHQ
EHGEQFARAQMEAMASQEISYLEKNINFLGTLSAIAPLLGLLGTVVGIIESFLVIDFGSAGSPSLMIPGISKALITTAVG
MLIAIPALISYRYFQRVVQNYIAELEQQSTLFHASLFYKRSSVVQEHRRVG

Nucleotide


Download         Length: 636 bp        

>NTDB_id=408524 H0S59_RS08560 WP_004887494.1 1835573..1836208(+) (exbB) [Acinetobacter nosocomialis strain WM98B]
ATGTGGGAACTTGTGAAAGCGGGCGGCTGGTTAATGCTGCCTTTAATTTTGTGTTCAATTTTAACGGTCGCTATTAGTAT
TGAACGTTTTATACGTTTGAGACGTTCACAAGTTTTGCCTAAAGCACTGATGAGTGATGGTAGTGCAGATATTTCTCATA
TCATTACAAATTTGGAGCAAGATACTGATGCCTCAAGTACAGCATTAGGAAATATTCTAAAAGCTGGTTTTGAGCATCAG
GAGCATGGAGAGCAATTTGCTCGGGCTCAAATGGAAGCAATGGCTTCTCAAGAAATTTCTTATTTAGAAAAAAATATTAA
CTTCTTGGGAACTTTAAGTGCTATAGCACCTTTGCTTGGGTTACTTGGAACAGTTGTAGGGATTATTGAGTCTTTTCTCG
TGATTGATTTTGGTTCGGCAGGTAGTCCAAGTTTAATGATTCCTGGTATTTCAAAGGCCTTGATCACGACAGCGGTTGGA
ATGCTCATTGCAATTCCTGCACTTATTTCTTATCGTTATTTTCAGAGAGTGGTACAAAATTACATTGCGGAGTTAGAGCA
ACAATCTACACTCTTTCATGCATCATTGTTTTATAAACGTTCTTCTGTTGTGCAAGAACATCGCCGTGTTGGTTGA

Domains

Predicted by InterProScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0AA36NWB2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

41.981

100

0.422