Detailed information NTG0408523

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: GPY32_RS24690
• Genome accession: NZ_CP046828
• Coordinates: 3213914..3214921 (+)
• Length: 335 a.a.
• NCBI ID: WP_005481416.1
• Uniprot ID: A0A072GUT1
• Organism: Vibrio parahaemolyticus strain 2010V-1106
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 3208914..3219921

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GPY32_RS24665	rplC	3209448..3210077 (-)	630	WP_005456132.1	50S ribosomal protein L3	-
GPY32_RS24670	rpsJ	3210092..3210403 (-)	312	WP_004410492.1	30S ribosomal protein S10	-
GPY32_RS24675	rpmE	3210861..3211082 (-)	222	WP_005457203.1	50S ribosomal protein L31	-
GPY32_RS24685	priA	3211377..3213581 (+)	2205	WP_005496931.1	primosomal protein N'	-
GPY32_RS24690	cytR	3213914..3214921 (+)	1008	WP_005481416.1	DNA-binding transcriptional regulator CytR	Regulator
GPY32_RS24695	ftsN	3215097..3215642 (+)	546	WP_005496929.1	cell division protein FtsN	-
GPY32_RS24700	hslV	3215806..3216357 (+)	552	WP_005489705.1	ATP-dependent protease subunit HslV	-
GPY32_RS24705	hslU	3216381..3217712 (+)	1332	WP_005489452.1	HslU--HslV peptidase ATPase subunit	-
GPY32_RS24710	-	3217897..3218814 (+)	918	WP_005457195.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
GPY32_RS24715	rraA	3218891..3219403 (+)	513	WP_005457192.1	ribonuclease E activity regulator RraA	-
GPY32_RS24720	zapB	3219508..3219750 (-)	243	WP_005481417.1	cell division protein ZapB	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 36835.35 Da
• Isoelectric Point: 6.4938

>NTDB_id=408523 GPY32_RS24690 WP_005481416.1 3213914..3214921(+) (cytR) [Vibrio parahaemolyticus strain 2010V-1106]
MATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEDAVLEAGYSPNSLARNLRRNESKTIVTIVPDICDPYFSEIIRG
IEDAAMEHGYLVLLGDSGQQKKRESSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLTQLGHKRIAQISGPDTAVLCQFRQQGYQQALRRAGISKDPQYSVITEFSFDGGAKAVRKLLELPEPPTA
IFCHCDTMAIGAIQEAKRLGLRVPQDLSVVGFDDINFAQYCDPPLTTISQPRYEIGRQAMLMMLELLKGHDVHSGSRLLE
TKLVVRGSAAPPQRA

Nucleotide

• Length: 1008 bp

>NTDB_id=408523 GPY32_RS24690 WP_005481416.1 3213914..3214921(+) (cytR) [Vibrio parahaemolyticus strain 2010V-1106]
ATGGCGACAATGAAGGATGTTGCCCAGCTTGCGGGAGTGTCGACAGCTACGGTATCTCGAGCATTAATGAATCCAGAAAA
AGTCTCTTCTTCAACAAGAAAAAGAGTCGAAGATGCCGTCCTTGAAGCGGGCTATTCTCCAAATTCATTAGCGCGTAATC
TACGTAGAAACGAATCAAAAACGATTGTTACCATCGTTCCTGACATCTGTGATCCTTACTTTTCTGAAATCATTCGTGGT
ATCGAAGACGCAGCTATGGAACATGGCTACCTCGTACTACTCGGTGACAGCGGCCAGCAGAAAAAGCGTGAAAGCTCGTT
TGTGAATCTAGTGTTCACCAAACAAGCCGATGGCATGTTACTGCTTGGCACCGACCTGCCATTTGATGTCAGCAAGCCAG
AACAGAAAAACCTGCCACCAATGGTCATGGCTTGTGAGTTTGCGCCAGAGCTAGAATTACCAACCGTGCACATTGACAAC
CTAACGTCTGCTTTTGAAGCGGTCAATTACCTAACTCAACTTGGCCATAAACGCATAGCACAAATTTCAGGGCCAGACAC
AGCGGTATTGTGCCAGTTCCGCCAGCAAGGTTATCAACAAGCCTTGCGTCGCGCGGGGATCAGTAAAGACCCACAATACA
GCGTTATCACTGAGTTTTCTTTTGACGGCGGCGCGAAAGCTGTACGTAAGTTGCTAGAACTTCCAGAGCCACCAACTGCG
ATTTTCTGCCACTGTGACACCATGGCAATCGGCGCAATCCAAGAAGCGAAACGACTCGGTCTGCGCGTTCCGCAAGATCT
GTCAGTGGTTGGTTTCGATGATATCAACTTTGCTCAATACTGCGATCCACCGTTAACAACCATTTCTCAACCTCGTTATG
AAATTGGCCGCCAAGCGATGCTTATGATGCTTGAACTCCTGAAAGGCCATGACGTTCATTCAGGTTCACGCTTACTAGAA
ACTAAGCTTGTTGTCCGTGGTAGCGCAGCGCCACCGCAACGCGCCTAA

Domains

Predicted by InterproScan.

• Bacterial regulatory proteins, lacI family (LacI) (3-48)

• Periplasmic binding protein-like domain (Peripla_BP_3) (168-328)

3D structure

• AlphaFold DB: A0A072GUT1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	100	100	1
cytR	Vibrio cholerae C6706	90.719	99.701	0.904