Detailed information NTG0408513

Bioinformatically predicted

Overview

• Name: sbcB
• Type: Machinery gene
• Locus tag: GPY32_RS19505
• Genome accession: NZ_CP046828
• Coordinates: 2147263..2148684 (+)
• Length: 473 a.a.
• NCBI ID: WP_005495501.1
• Uniprot ID: -
• Organism: Vibrio parahaemolyticus strain 2010V-1106
• Function: promote homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2142263..2153684

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GPY32_RS19485	-	2142323..2143075 (-)	753	WP_031777310.1	adenosylcobinamide-GDP ribazoletransferase	-
GPY32_RS19490	cobT	2143120..2144163 (-)	1044	WP_005495498.1	nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase	-
GPY32_RS19495	-	2144846..2145541 (+)	696	WP_005495499.1	NAD(P)H-binding protein	-
GPY32_RS19500	-	2145734..2147107 (+)	1374	WP_005495500.1	L-cystine transporter	-
GPY32_RS19505	sbcB	2147263..2148684 (+)	1422	WP_005495501.1	exodeoxyribonuclease I	Machinery gene
GPY32_RS19510	-	2148740..2149114 (+)	375	WP_005455074.1	CidA/LrgA family protein	-
GPY32_RS19515	-	2149116..2149793 (+)	678	WP_005495502.1	LrgB family protein	-
GPY32_RS19520	cdd	2150158..2151045 (+)	888	WP_005495503.1	cytidine deaminase	-
GPY32_RS19525	purT	2151193..2152368 (+)	1176	WP_005495504.1	formate-dependent phosphoribosylglycinamide formyltransferase	-
GPY32_RS19530	-	2152470..2153120 (-)	651	WP_005495505.1	thiopurine S-methyltransferase	-

Sequence

Protein

• Length: 473 a.a.
• Molecular weight: 54620.96 Da
• Isoelectric Point: 4.9244

>NTDB_id=408513 GPY32_RS19505 WP_005495501.1 2147263..2148684(+) (sbcB) [Vibrio parahaemolyticus strain 2010V-1106]
MHQDNQPTFFFFDYETWGTNPAKDRPSQFAGVRTDENFNIIGEPLVMYCQLPADYLPSPEAALITGITPQKAMQEGLSEP
EFIAKIQAELSKPKTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVLRACHALRPEGIEWPENEDGFT
SFKLEHLSVKNGIEHSNAHDAMADVIATIEMAKKVKAAQPKLFDYFFSMRHKRKLNELVDIVNMTPLMHVSGMLGRECQY
TSWIVPVAWHPTNNNAVITIDLAKDPQPILELSTEELHERLYTKREDLGDLLPVPVKLVHLNKCPILAPAKTLTAENAEN
IGIDRQKCLDNLALLRQHPEIREKLIGLFSIERQFEKSDDVDTQLYDGFFSPADRAAMDIIRETDPNNLAALDIEFDDKR
IKPLLFRYRARNFPGTLDEQEQRRWALHCREVFESQIEEYMLNLENLVHEHESDEKKIAILKSVYRYVESLAS

Nucleotide

• Length: 1422 bp

>NTDB_id=408513 GPY32_RS19505 WP_005495501.1 2147263..2148684(+) (sbcB) [Vibrio parahaemolyticus strain 2010V-1106]
ATGCACCAAGATAATCAGCCCACTTTTTTCTTCTTTGACTACGAGACTTGGGGTACAAATCCCGCGAAAGATCGTCCAAG
CCAATTTGCTGGTGTTCGCACAGATGAAAACTTCAATATCATCGGCGAACCTCTGGTGATGTACTGCCAGCTACCTGCTG
ATTATCTACCTTCTCCGGAAGCCGCATTAATTACGGGTATTACGCCGCAAAAGGCGATGCAAGAAGGCCTATCTGAGCCT
GAGTTCATTGCTAAGATTCAAGCCGAGTTATCGAAACCCAAAACCACTAGCCTAGGCTACAACAGCATTCGTTTTGATGA
CGAAGTCACGCGTTACACCTGTTACCGCAACTTTATCGACCCATACGCGTGGAGCTGGCAAAACGGCAACTCGCGTTGGG
ACTTGCTCGATGTATTGCGTGCATGCCATGCGTTGCGTCCTGAAGGCATAGAATGGCCCGAGAATGAAGACGGCTTCACC
AGTTTCAAGTTAGAACATTTATCGGTTAAAAATGGCATTGAGCACAGTAATGCGCACGACGCGATGGCTGACGTTATCGC
AACGATTGAGATGGCTAAGAAAGTCAAAGCCGCGCAGCCAAAACTGTTCGATTACTTCTTCTCTATGCGCCACAAACGTA
AGCTGAATGAACTGGTTGATATTGTAAACATGACACCGCTGATGCATGTCTCAGGCATGTTAGGTCGCGAATGCCAATAC
ACCAGCTGGATTGTGCCTGTCGCGTGGCATCCAACGAATAACAACGCGGTTATTACGATTGATTTAGCCAAAGATCCGCA
GCCAATTCTTGAACTTTCAACCGAAGAGTTGCACGAACGTCTCTACACCAAGCGTGAAGACCTCGGCGACCTACTACCCG
TACCGGTGAAACTGGTTCACCTCAATAAGTGCCCTATTTTAGCACCAGCGAAAACGTTGACGGCGGAAAACGCAGAAAAC
ATCGGTATTGATCGTCAGAAGTGTCTCGATAATTTGGCACTACTTCGCCAGCACCCTGAGATTCGAGAAAAACTAATCGG
CTTGTTCTCTATCGAGCGTCAATTTGAAAAAAGCGATGATGTGGACACTCAACTTTACGATGGCTTCTTCTCTCCAGCTG
ACCGTGCAGCGATGGATATTATCCGCGAAACCGATCCAAACAATCTTGCTGCCTTAGATATCGAGTTTGACGATAAACGC
ATCAAACCGCTGCTATTCAGATACCGTGCTCGTAACTTCCCAGGCACTCTCGATGAGCAAGAGCAACGACGCTGGGCACT
TCATTGCCGAGAGGTATTTGAAAGCCAAATCGAAGAGTATATGCTGAATTTAGAAAACTTAGTTCACGAACATGAAAGTG
ACGAAAAGAAGATTGCAATATTAAAATCCGTTTACCGTTATGTAGAGAGCCTAGCCTCCTAA

Domains

Predicted by InterproScan.

• Exonuclease (RNase_T) (11-190)

• Exonuclease C-terminal (Exonuc_X-T_C) (210-469)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
sbcB	Vibrio cholerae O1 biovar El Tor strain E7946	79.915	100	0.799