Detailed information NTG0408502

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: GPY32_RS12720
• Genome accession: NZ_CP046828
• Coordinates: 793073..794062 (+)
• Length: 329 a.a.
• NCBI ID: WP_005478537.1
• Uniprot ID: A8D8R0
• Organism: Vibrio parahaemolyticus strain 2010V-1106
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 788073..799062

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GPY32_RS12685	ftsB	788081..788362 (+)	282	WP_005455577.1	cell division protein FtsB	-
GPY32_RS12690	ispD	788364..789068 (+)	705	WP_005493934.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
GPY32_RS12695	ispF	789086..789562 (+)	477	WP_005493937.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
GPY32_RS12700	truD	789609..790652 (+)	1044	WP_005493940.1	tRNA pseudouridine(13) synthase TruD	-
GPY32_RS12705	surE	790652..791428 (+)	777	WP_005493942.1	5'/3'-nucleotidase SurE	-
GPY32_RS12710	-	791428..792054 (+)	627	WP_005455562.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
GPY32_RS12715	-	792069..792992 (+)	924	WP_005455560.1	peptidoglycan DD-metalloendopeptidase family protein	-
GPY32_RS12720	rpoS	793073..794062 (+)	990	WP_005478537.1	RNA polymerase sigma factor RpoS	Regulator
GPY32_RS12725	mutS	794142..796703 (-)	2562	WP_005493944.1	DNA mismatch repair protein MutS	-
GPY32_RS12730	pncC	796788..797270 (+)	483	WP_005493945.1	nicotinamide-nucleotide amidase	-
GPY32_RS12735	recA	797471..798514 (+)	1044	WP_005478550.1	recombinase RecA	Machinery gene

Sequence

Protein

• Length: 329 a.a.
• Molecular weight: 37560.38 Da
• Isoelectric Point: 4.6096

>NTDB_id=408502 GPY32_RS12720 WP_005478537.1 793073..794062(+) (rpoS) [Vibrio parahaemolyticus strain 2010V-1106]
MSISNTVSKVEEFEYDNASETTIDNELEKSSSTTEGKTAVREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRAL
RGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRT
IRLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNS
DPEVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREILIKQGLNM
ENLFNVEDD

Nucleotide

• Length: 990 bp

>NTDB_id=408502 GPY32_RS12720 WP_005478537.1 793073..794062(+) (rpoS) [Vibrio parahaemolyticus strain 2010V-1106]
ATGAGTATCAGCAACACAGTATCCAAAGTTGAAGAGTTTGAATACGACAATGCGTCAGAGACGACCATTGATAACGAACT
CGAAAAATCATCATCTACTACCGAAGGCAAAACAGCTGTCCGTGAAGAGTTTGACGCGAGCAGTAAAAGCCTAGACGCAA
CTCAATTGTATCTAGGTGAAATTGGCTTCTCACCTCTACTTACTGCTGAAGAAGAAGTCCTTTACGCCCGCAGAGCATTG
CGTGGTGATGAAGCGGCTCGTAAGCGCATGATCGAAAGTAACTTGCGTTTAGTAGTAAAAATTTCTCGTCGGTACAGCAA
CCGTGGCCTAGCGCTACTCGATCTTATTGAAGAAGGTAACCTCGGCTTGATCCGAGCGGTTGAAAAATTCGATCCAGAAA
GAGGCTTCCGTTTCTCAACTTACGCAACATGGTGGATCCGTCAAACGATCGAACGTGCGTTGATGAACCAAACTCGCACC
ATTCGCTTGCCTATTCATGTCGTGAAAGAGCTGAACATTTATCTGCGTACTGCGCGTGAACTTTCTCAAAAGCTCGATCA
TGAACCAACTGCAGAAGAAATTGCTGCTCAATTAGATATACCAGTAGAAGATGTCAGTAAAATGCTGCGTCTTAACGAGC
GTATTAGCTCCGTTGATACCCCAATTGGTGGTGACGGTGAAAAAGCGCTTCTGGATATTATTCCTGACGCAAACAACTCT
GATCCAGAAGTGTCGACTCAAGATGATGACATCAAATCGTCTTTGATCCATTGGTTGGAAGAGTTGAATCCAAAACAAAA
AGAAGTGCTTGCACGCCGTTTTGGTTTGCTTGGTTATGAGCCGTCTACACTTGAAGAAGTGGGACGAGAGATTGGTCTTA
CTCGTGAGCGTGTACGTCAAATTCAAGTGGAGGGTTTACGTCGACTTCGTGAAATTCTAATTAAACAAGGCCTAAATATG
GAAAACTTGTTTAACGTCGAAGACGATTAA

Domains

Predicted by InterproScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (52-85)

• Sigma-70 region 2 (Sigma70_r2) (90-159)

• Sigma-70, region 4 (Sigma70_r4) (258-311)

• Sigma-70 region 3 (Sigma70_r3) (170-243)

3D structure

• AlphaFold DB: A8D8R0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.832	100	0.851