Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   GPY13_RS13440 Genome accession   NZ_CP046823
Coordinates   2913342..2914349 (-) Length   335 a.a.
NCBI ID   WP_000224452.1    Uniprot ID   A0A085RG68
Organism   Vibrio mimicus strain 06-2455     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 2908342..2919349
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY13_RS13415 rraA 2908939..2909454 (-) 516 WP_000456240.1 ribonuclease E activity regulator RraA -
  GPY13_RS13420 - 2909529..2910446 (-) 918 WP_005512015.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -
  GPY13_RS13425 hslU 2910553..2911884 (-) 1332 WP_001293363.1 HslU--HslV peptidase ATPase subunit -
  GPY13_RS13430 hslV 2911927..2912478 (-) 552 WP_000208246.1 ATP-dependent protease subunit HslV -
  GPY13_RS13435 - 2912621..2913172 (-) 552 WP_005524321.1 SPOR domain-containing protein -
  GPY13_RS13440 cytR 2913342..2914349 (-) 1008 WP_000224452.1 DNA-binding transcriptional regulator CytR Regulator
  GPY13_RS13445 priA 2914655..2916859 (-) 2205 WP_001247895.1 primosomal protein N' -
  GPY13_RS13450 rpmE 2917114..2917332 (+) 219 WP_000643443.1 50S ribosomal protein L31 -
  GPY13_RS13455 - 2917642..2918919 (+) 1278 WP_001278593.1 malic enzyme-like NAD(P)-binding protein -
  GPY13_RS13460 metJ 2919019..2919336 (-) 318 WP_000796267.1 met regulon transcriptional regulator MetJ -

Sequence

Protein


Download         Length: 335 a.a.        Molecular weight: 37018.59 Da        Isoelectric Point: 7.0759

>NTDB_id=408470 GPY13_RS13440 WP_000224452.1 2913342..2914349(-) (cytR) [Vibrio mimicus strain 06-2455]
MATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEEAVLEAGYSPNSLARNLRRNESKTIVAIVPDICDPYFSEIIRG
IEDAAMEHGYLVLLGDSGQQKRRENSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLTQLGHKRIAQISGPQHAALCQFRHQGYQQALRRAGITMNPTYCTFGDFTFEAGAKAVRQLLALPEQPTA
IFCHNDTMAIGAIQEAKRLGLRVPQDLSVVGFDDIQFAQYCDPPLTTISQPRYEIGRQAMLMMLELLRGHDVRAGSRLLE
TKLVVRESAAPPSKK

Nucleotide


Download         Length: 1008 bp        

>NTDB_id=408470 GPY13_RS13440 WP_000224452.1 2913342..2914349(-) (cytR) [Vibrio mimicus strain 06-2455]
ATGGCGACAATGAAGGATGTTGCCCAGCTTGCCGGAGTCTCAACCGCGACCGTGTCTCGTGCGTTGATGAACCCTGAAAA
AGTCTCCTCATCAACTCGTAAACGAGTGGAAGAGGCGGTGCTGGAAGCGGGTTACTCACCAAATTCTTTAGCGCGCAATT
TGCGCCGCAATGAGTCAAAAACCATCGTTGCTATTGTTCCTGATATCTGTGATCCCTACTTTTCTGAGATCATTCGCGGT
ATTGAAGATGCGGCTATGGAGCACGGCTATTTGGTGTTGTTGGGTGACAGTGGTCAACAAAAGCGTCGGGAGAATTCCTT
TGTAAACCTTGTGTTTACTAAACAAGCCGATGGCATGTTACTGCTGGGTACAGATTTACCGTTTGATGTGAGTAAGCCTG
AACAGAAAAATCTGCCGCCTATGGTGATGGCGTGTGAATTTGCTCCTGAGCTTGAATTACCGACGGTGCATATCGATAAC
CTGACTTCTGCATTTGAAGCGGTGAACTATCTGACTCAGCTTGGGCATAAGCGCATTGCGCAGATCTCTGGCCCACAACA
TGCGGCATTGTGCCAATTCCGTCATCAAGGCTATCAACAGGCGTTGCGTCGTGCTGGCATCACTATGAACCCGACTTACT
GCACTTTTGGCGATTTCACTTTTGAAGCCGGGGCAAAAGCGGTGCGCCAGTTACTGGCGTTGCCAGAGCAACCAACCGCC
ATTTTCTGTCACAATGATACGATGGCGATTGGGGCGATTCAGGAAGCTAAACGACTGGGTCTGCGAGTACCGCAAGATCT
CTCCGTCGTCGGCTTTGATGATATTCAGTTTGCTCAGTACTGTGATCCACCGCTGACCACTATCTCGCAACCTCGTTATG
AAATTGGCCGCCAAGCCATGCTGATGATGTTAGAGCTACTGCGTGGGCATGATGTACGTGCCGGGTCACGTTTGCTTGAA
ACCAAACTCGTGGTACGTGAGAGTGCTGCGCCGCCAAGCAAAAAATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, lacI family (LacI)

(3-48)

Periplasmic binding protein-like domain (Peripla_BP_3)

(168-328)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A085RG68

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

100

100

1
  cytR Vibrio parahaemolyticus RIMD 2210633

90.719

99.701

0.904

Multiple sequence alignment