Detailed information NTG0408448

Bioinformatically predicted

Overview

• Name: chiS
• Type: Regulator
• Locus tag: GPY13_RS03255
• Genome accession: NZ_CP046823
• Coordinates: 674440..677973 (-)
• Length: 1177 a.a.
• NCBI ID: WP_005514000.1
• Uniprot ID: -
• Organism: Vibrio mimicus strain 06-2455
• Function: chitin sensor (predicted from homology) Competence regulation

Genomic Context

Location: 669440..682973

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GPY13_RS03240	-	669905..670930 (-)	1026	WP_000646276.1	ABC transporter permease	-
GPY13_RS03245	-	670933..671919 (-)	987	WP_000540341.1	ABC transporter permease	-
GPY13_RS03250	-	672089..673759 (-)	1671	WP_000880696.1	ABC transporter substrate-binding protein	-
GPY13_RS03255	chiS	674440..677973 (-)	3534	WP_005514000.1	two-component system sensor histidine kinase ChiS	Regulator
GPY13_RS03260	rsmC	678037..679059 (-)	1023	WP_001165074.1	16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC	-
GPY13_RS03265	-	679132..680217 (-)	1086	WP_001290823.1	AI-2E family transporter	-
GPY13_RS03270	-	680254..680409 (+)	156	WP_000187948.1	hypothetical protein	-
GPY13_RS03275	hemL	680455..681753 (-)	1299	WP_000167253.1	glutamate-1-semialdehyde 2,1-aminomutase	-
GPY13_RS03280	erpA	682037..682378 (+)	342	WP_000005742.1	iron-sulfur cluster insertion protein ErpA	-

Sequence

Protein

• Length: 1177 a.a.
• Molecular weight: 133187.28 Da
• Isoelectric Point: 6.5823

>NTDB_id=408448 GPY13_RS03255 WP_005514000.1 674440..677973(-) (chiS) [Vibrio mimicus strain 06-2455]
MRLCPRFRLDLLVKVKKLVNFVTLGFSCQSPTHAWRSPQSFTKSNALIMFRFYRKQKFKRLQNTLMAAFLALSIIPLTIT
ALFFLHSHSKDLEEQSTSYLVSVRDTKQQQVIDYMMAKESEVMGFVRSELAYASGGRFYGLVNAFQRLDVSIEAAREHAQ
QRYIPGSGDQIKTSVLPQSSSYVGSERYRLLHKRYHWAYLELLKRSDFDDILLVDIEGNVVYSIYKYDNFGTNLLTGKYK
DSSLGSTFKRLEQTVNEQRKTNEDFTPVVISDFVQEDGKQYAWLGAPIIQQGYLHSYAMFRLPSNAITKLIADGSSNPSM
QTILVGQDHRSRTLTSAEVAVEKSKEVVDLALSGKRSVGTYTNTDDEEIIAAYAPINLKSIHWALVVELPEKEAFARVRQ
LEKLFVFAMLTAIVLVVIASHYLSNFITSPLLKLTWAAERVSAGDLDEAMINTERKDEIGRLAVSFERMQRSIREKISLI
KSQNKELENNLLIIRKQNDELQLANKLKDEFLATTSHELRTPLHGMIGIAEALVSGANGPLTAAHKYQLDIIISSGQRLA
TLVDDLLDYHKMRYGALDIQKGAVDLSSATRLVLELSNHLLGKKTLRIINQVSEQPVWVSADPQRLEQVLYNLIGNAIKY
TSEGKIVISATYIDDKVRVQVVDTGQGIPAEQLEQIFEPLIQAGRDASRYRQGAGLGLSISRQLIELMNGTLYVSSQPMV
GTTFSFTLPLATQEEIDQARLTELPHFQAPEILDTELPEQSTLPENEHGPLLLVADDEPVNLRVLDSFLRLEGYRVHTAQ
DGHEVLEAIQREKPELLLLDIMMPGMSGYQVCEKLRQTYDHAELPIIMLTALNQSDDRVRGFEAGANDYLSKPFNKQELA
ARIVAHLTASKAELRRIENAQLQKELKHRAMVEASLLETQGRLLEQLESAPEAILCVKEGNKVRFANEAAARLFRRTPEQ
LKRSNAEELIAPKYLNIEQEHYCGNIDVYVDDVRQHLSADVLRLPEGSGLQAMYIFNVGGSINAARIFNLETAVEALSSY
AFEGDKDKLQKLKELGGEFTRIADKASGEYQSKQDLMRAVLVEAMTSALNYWENVSGQSKFTFAEQSGLWRVYLDRSTLQ
TRTLDKYLRIETLPKTPRWRTVLNSLDYILEHCKEPGPDRTHIEMQRDKLQKLLTSE

Nucleotide

• Length: 3534 bp

>NTDB_id=408448 GPY13_RS03255 WP_005514000.1 674440..677973(-) (chiS) [Vibrio mimicus strain 06-2455]
TTGCGTCTATGCCCACGCTTTAGATTGGACTTACTTGTCAAAGTAAAAAAACTCGTTAATTTCGTTACTTTAGGTTTTTC
TTGTCAATCACCCACTCATGCTTGGCGATCGCCACAGAGTTTCACCAAAAGTAATGCCTTAATTATGTTTAGGTTCTATC
GAAAACAAAAATTCAAGCGCCTGCAAAATACGCTAATGGCGGCATTTCTGGCACTCAGTATTATTCCATTAACTATCACA
GCGCTGTTTTTCCTCCATTCACACAGTAAAGATTTGGAAGAGCAAAGTACCTCTTACCTTGTTTCAGTACGCGATACCAA
ACAGCAGCAAGTGATCGATTATATGATGGCCAAAGAGTCGGAAGTGATGGGTTTTGTCCGTTCCGAACTCGCTTATGCCA
GTGGTGGTCGCTTTTATGGTTTAGTGAACGCCTTCCAGCGCTTGGATGTCAGCATTGAAGCGGCACGCGAGCATGCCCAA
CAGCGCTATATACCGGGCTCAGGTGATCAAATAAAAACCTCAGTACTGCCACAATCAAGTAGCTATGTGGGCAGTGAACG
CTATCGGCTCCTGCACAAACGTTATCATTGGGCTTATTTAGAACTGCTGAAACGTTCGGACTTTGACGACATATTGCTGG
TAGATATTGAAGGCAACGTTGTTTACTCCATCTATAAATACGACAACTTCGGAACCAACTTATTAACGGGAAAATATAAA
GATTCCAGTCTGGGGAGTACCTTTAAACGCCTCGAGCAAACCGTTAATGAACAGCGCAAGACTAACGAAGATTTCACACC
TGTGGTTATCTCTGACTTTGTGCAAGAAGATGGAAAACAATATGCTTGGCTCGGTGCACCCATCATTCAACAAGGGTATT
TGCACAGTTACGCTATGTTCCGCCTGCCAAGTAATGCGATCACTAAGCTGATCGCGGATGGCAGTAGCAATCCATCGATG
CAAACCATTTTGGTTGGCCAAGATCATCGTTCAAGAACCTTAACTTCCGCTGAAGTGGCAGTTGAAAAAAGCAAAGAAGT
GGTCGATTTAGCCTTATCTGGAAAACGTTCTGTCGGCACTTACACCAATACCGATGATGAAGAGATCATTGCTGCGTACG
CCCCAATTAATCTGAAAAGTATTCATTGGGCGTTAGTAGTAGAATTACCAGAAAAAGAAGCCTTTGCTCGCGTACGTCAG
TTAGAAAAGCTCTTCGTCTTCGCGATGCTGACGGCGATCGTCTTAGTGGTCATTGCTTCCCATTACCTATCCAACTTCAT
TACTTCCCCACTGTTGAAACTAACTTGGGCAGCAGAACGAGTCTCGGCAGGCGATCTTGATGAAGCTATGATCAATACCG
AGCGTAAAGATGAAATTGGCCGATTAGCGGTCAGTTTTGAACGTATGCAGCGCTCCATACGCGAAAAAATATCGCTGATC
AAATCGCAAAACAAAGAGCTAGAAAACAATCTCCTGATCATTCGTAAACAAAACGATGAATTGCAGCTCGCGAACAAACT
CAAAGATGAATTCCTCGCTACGACATCGCACGAGTTACGCACTCCCCTGCATGGCATGATCGGGATTGCTGAAGCGTTAG
TCTCTGGTGCCAATGGCCCATTGACCGCCGCTCATAAGTATCAGCTCGACATCATCATCAGTAGTGGACAACGCTTAGCC
ACCTTGGTTGATGACCTGCTGGACTACCACAAAATGCGCTATGGTGCGCTGGATATCCAAAAAGGTGCCGTCGATTTATC
GAGTGCAACCCGCTTGGTGCTTGAGCTTTCAAACCATTTGCTTGGCAAGAAAACGCTGCGCATCATTAATCAAGTCTCAG
AGCAACCTGTCTGGGTATCGGCCGATCCACAACGCTTAGAACAAGTTCTGTATAACCTGATCGGTAACGCGATCAAGTAC
ACCTCCGAAGGTAAGATTGTTATCTCAGCAACCTATATTGACGATAAAGTCAGGGTACAAGTCGTGGATACAGGACAAGG
TATTCCTGCTGAGCAGCTTGAACAGATCTTTGAACCTTTAATCCAAGCAGGGCGTGATGCCAGTCGCTATCGTCAAGGTG
CGGGACTCGGGCTCTCCATTAGTCGTCAGTTAATTGAGCTAATGAACGGCACTCTTTATGTGAGTAGCCAGCCTATGGTT
GGTACGACATTCAGCTTTACTCTGCCGTTGGCCACACAAGAGGAAATTGACCAAGCTCGTTTGACTGAGTTACCTCATTT
CCAAGCACCGGAAATTTTGGATACCGAACTGCCAGAGCAAAGTACACTGCCTGAAAATGAGCATGGCCCACTTCTGCTTG
TCGCCGATGATGAGCCAGTAAACCTCAGAGTCTTGGACAGCTTTTTACGTCTCGAAGGTTATCGCGTTCATACAGCTCAA
GATGGCCATGAAGTGCTTGAAGCCATTCAGCGTGAGAAACCGGAGCTCTTGTTACTGGACATCATGATGCCGGGCATGAG
TGGTTATCAAGTCTGTGAAAAACTAAGGCAGACTTACGATCATGCTGAACTCCCTATCATCATGTTGACCGCTCTTAACC
AATCTGATGACCGAGTACGTGGATTTGAAGCTGGGGCGAATGACTATTTGTCCAAACCTTTTAATAAGCAGGAATTGGCT
GCGCGTATCGTTGCCCATCTCACTGCCAGCAAAGCTGAACTAAGGCGCATTGAAAATGCTCAGCTCCAAAAAGAGCTGAA
GCATCGTGCCATGGTAGAGGCCAGCTTACTCGAAACGCAAGGACGTTTGTTAGAGCAATTAGAATCGGCACCAGAAGCGA
TTCTATGCGTCAAAGAAGGCAACAAAGTACGCTTTGCTAATGAAGCAGCCGCCCGTTTATTTAGACGCACACCAGAACAG
CTCAAACGCTCGAATGCTGAAGAGTTGATTGCACCTAAATACCTGAATATTGAACAAGAACATTACTGTGGCAACATCGA
CGTTTACGTGGATGATGTACGACAGCATCTGTCGGCAGATGTACTGCGTTTACCGGAAGGCTCTGGATTACAGGCCATGT
ACATTTTCAATGTGGGTGGCAGCATTAACGCAGCGCGCATTTTCAATCTTGAAACCGCTGTAGAGGCGCTATCTAGTTAC
GCTTTCGAGGGCGACAAAGATAAACTTCAGAAGCTCAAAGAACTCGGTGGCGAGTTTACTCGCATAGCTGATAAAGCATC
AGGAGAATATCAATCCAAACAAGATTTGATGCGTGCTGTATTGGTGGAAGCCATGACCAGCGCCCTCAATTATTGGGAAA
ATGTTTCAGGGCAAAGCAAGTTCACGTTTGCAGAACAAAGTGGCCTGTGGCGCGTTTATCTAGACCGTAGCACCTTACAA
ACTCGTACCTTAGACAAGTACTTACGAATTGAGACACTGCCTAAAACACCACGCTGGAGAACGGTTCTAAACTCGCTTGA
TTACATTCTTGAGCACTGTAAAGAGCCAGGACCAGATCGTACTCATATCGAAATGCAACGCGATAAACTGCAAAAGCTAC
TGACCAGTGAGTGA

Domains

Predicted by InterproScan.

• PAS domain (PAS_8) (927-961)

• Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c) (622-731)

• Response regulator receiver domain (Response_reg) (773-883)

• His Kinase A (phospho-acceptor) domain (HisKA) (508-573)

• HAMP domain (HAMP) (423-475)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
chiS	Vibrio cholerae strain A1552	96.092	100	0.961