Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   GPY13_RS02965 Genome accession   NZ_CP046823
Coordinates   609978..610496 (+) Length   172 a.a.
NCBI ID   WP_001130224.1    Uniprot ID   Q401L3
Organism   Vibrio mimicus strain 06-2455     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 604978..615496
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY13_RS02955 - 605383..608238 (+) 2856 WP_001226067.1 pitrilysin family protein -
  GPY13_RS02960 gshA 608350..609924 (+) 1575 WP_000032600.1 glutamate--cysteine ligase -
  GPY13_RS02965 luxS 609978..610496 (+) 519 WP_001130224.1 S-ribosylhomocysteine lyase Regulator
  GPY13_RS02970 - 610598..611872 (-) 1275 WP_000340995.1 HlyC/CorC family transporter -
  GPY13_RS02975 - 611955..612749 (-) 795 WP_000369275.1 inner membrane protein YpjD -
  GPY13_RS02980 ffh 612962..614347 (+) 1386 WP_000462719.1 signal recognition particle protein -
  GPY13_RS02985 rpsP 614586..614834 (+) 249 WP_000256449.1 30S ribosomal protein S16 -
  GPY13_RS02990 rimM 614862..615416 (+) 555 WP_000061902.1 ribosome maturation factor RimM -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19005.86 Da        Isoelectric Point: 5.5455

>NTDB_id=408446 GPY13_RS02965 WP_001130224.1 609978..610496(+) (luxS) [Vibrio mimicus strain 06-2455]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTLPNKDILSERGIHTLEHLYAGFMRAHLNGSQVEIIDISP
MGCRTGFYMSLIGAPTEQQVAQAWLAAMQDVLKVESQDKIPELNEYQCGTAAMHSLEEAKAIAQKVIAAGISVNRNDDLA
LPESMLNELKVH

Nucleotide


Download         Length: 519 bp        

>NTDB_id=408446 GPY13_RS02965 WP_001130224.1 609978..610496(+) (luxS) [Vibrio mimicus strain 06-2455]
ATGCCATTATTAGACAGCTTCACCGTCGATCATACTCGTATGAATGCACCAGCAGTGCGTGTTGCGAAGACCATGCAAAC
CCCAAAAGGCGATACCATTACGGTATTTGATTTGCGTTTTACTCTGCCAAACAAAGATATTTTGTCTGAGCGCGGTATTC
ACACTCTGGAGCATCTGTACGCGGGCTTTATGCGTGCTCACCTTAATGGAAGCCAAGTTGAGATTATCGATATTTCTCCT
ATGGGCTGCCGTACTGGCTTCTATATGAGTTTGATCGGTGCGCCAACTGAGCAGCAAGTGGCACAAGCTTGGTTAGCGGC
AATGCAAGATGTGTTGAAAGTGGAAAGCCAGGATAAGATTCCAGAGCTAAACGAATACCAGTGTGGTACAGCAGCGATGC
ATTCTCTGGAAGAAGCCAAAGCGATTGCGCAGAAAGTGATTGCGGCAGGGATTTCGGTTAACCGTAATGACGACTTGGCA
CTGCCTGAGTCAATGCTGAATGAGCTCAAGGTTCACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q401L3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

95.93

100

0.959

Multiple sequence alignment