Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   GPY13_RS02825 Genome accession   NZ_CP046823
Coordinates   583113..584123 (+) Length   336 a.a.
NCBI ID   WP_000116730.1    Uniprot ID   A0A1D8SDR3
Organism   Vibrio mimicus strain 06-2455     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 578113..589123
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY13_RS02790 ftsB 578164..578448 (+) 285 WP_001263188.1 cell division protein FtsB -
  GPY13_RS02795 ispD 578445..579143 (+) 699 WP_000738165.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  GPY13_RS02800 ispF 579140..579616 (+) 477 WP_000619214.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  GPY13_RS02805 truD 579646..580731 (+) 1086 WP_000129747.1 tRNA pseudouridine(13) synthase TruD -
  GPY13_RS02810 surE 580733..581485 (+) 753 WP_000698385.1 5'/3'-nucleotidase SurE -
  GPY13_RS02815 - 581478..582104 (+) 627 WP_000002984.1 protein-L-isoaspartate(D-aspartate) O-methyltransferase -
  GPY13_RS02820 nlpD 582104..583039 (+) 936 WP_000189384.1 murein hydrolase activator NlpD -
  GPY13_RS02825 rpoS 583113..584123 (+) 1011 WP_000116730.1 RNA polymerase sigma factor RpoS Regulator
  GPY13_RS02830 mutS 584200..586788 (-) 2589 WP_000982058.1 DNA mismatch repair protein MutS -
  GPY13_RS02835 cysM 587117..588004 (-) 888 WP_001279359.1 cysteine synthase CysM -

Sequence

Protein


Download         Length: 336 a.a.        Molecular weight: 38584.40 Da        Isoelectric Point: 4.3159

>NTDB_id=408443 GPY13_RS02825 WP_000116730.1 583113..584123(+) (rpoS) [Vibrio mimicus strain 06-2455]
MSVSNTVTKVEEFDFEDEALEVLEADDELSSDEELVTAEGASDEVREEFDASAKSLDATQMYLSEIGFSPLLTAEEEVLY
ARRALRGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALM
NQTRTIRLPIHVVKELNIYLRTARELSQRLDHEPTPEEIALELDKPVDDVTKMLRLNERISSVDTPIGGDGDKALLDILP
DSNNADPEFSTQDDDIRESLLNWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILVK
QGLNMEALFNVEYDVN

Nucleotide


Download         Length: 1011 bp        

>NTDB_id=408443 GPY13_RS02825 WP_000116730.1 583113..584123(+) (rpoS) [Vibrio mimicus strain 06-2455]
ATGAGTGTCAGCAATACCGTAACCAAAGTAGAAGAGTTCGATTTTGAAGATGAAGCACTGGAAGTGCTAGAAGCGGATGA
TGAGCTCTCGAGTGATGAAGAATTAGTGACCGCTGAAGGGGCAAGTGATGAAGTTCGCGAAGAGTTTGATGCTTCTGCGA
AAAGTCTCGATGCCACACAAATGTATCTCAGTGAAATTGGTTTCTCACCTCTACTGACTGCCGAAGAAGAAGTGCTTTAT
GCTCGTCGTGCTTTACGTGGCGATGAAGCAGCACGTAAACGCATGATTGAAAGCAACTTGCGTTTAGTCGTTAAAATTTC
ACGTCGCTACAGCAATCGTGGATTAGCACTGCTCGATCTGATTGAAGAAGGTAACTTAGGTCTCATTCGTGCGGTTGAAA
AATTCGACCCAGAACGTGGTTTCCGCTTTTCAACTTACGCGACATGGTGGATCCGTCAAACCATCGAACGTGCGCTGATG
AATCAAACTCGCACCATTCGTCTACCGATTCATGTTGTCAAAGAATTGAACATTTACCTGCGTACTGCTCGTGAATTGTC
ACAACGTCTTGACCACGAACCTACGCCAGAAGAAATCGCGCTCGAGCTCGATAAGCCGGTTGATGATGTAACTAAGATGC
TGCGTCTCAACGAACGTATCAGCTCTGTTGATACACCGATTGGCGGCGATGGTGATAAAGCACTGCTGGATATCTTGCCG
GACTCCAATAATGCGGATCCTGAGTTTTCGACTCAAGATGATGATATTCGTGAATCTCTGCTCAACTGGCTTGATGAACT
TAATCCAAAACAGAAAGAAGTTCTTGCTCGTCGTTTTGGTCTGTTGGGTTATGAGCCCTCCACCTTGGAAGAAGTGGGAC
GTGAGATCAATCTGACTCGTGAGCGTGTACGCCAAATTCAGGTAGAAGGGCTACGCCGTCTGCGTGAGATCTTGGTGAAA
CAAGGTTTGAATATGGAAGCTCTGTTTAACGTCGAATACGACGTCAACTAA

Domains

Predicted by InterproScan.

Sigma-70 region 3 (Sigma70_r3)

(175-248)

Sigma-70, region 4 (Sigma70_r4)

(263-316)

Sigma-70 region 2 (Sigma70_r2)

(95-164)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(57-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1D8SDR3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

97.305

99.405

0.967

Multiple sequence alignment