Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   HZ322_RS01885 Genome accession   NZ_CP059049
Coordinates   375959..376771 (-) Length   270 a.a.
NCBI ID   WP_003131583.1    Uniprot ID   Q9CIG7
Organism   Lactococcus lactis strain N8     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 370959..381771
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HZ322_RS01860 (HZ322_01860) ytpR 371185..371811 (+) 627 WP_015425841.1 YtpR family tRNA-binding protein -
  HZ322_RS01865 (HZ322_01865) nox 371974..373314 (+) 1341 WP_017864127.1 H2O-forming NADH oxidase -
  HZ322_RS01870 (HZ322_01870) - 373404..373793 (+) 390 WP_017864128.1 single-stranded DNA-binding protein -
  HZ322_RS01875 (HZ322_01875) groES 373913..374197 (+) 285 WP_017864129.1 co-chaperone GroES -
  HZ322_RS01880 (HZ322_01880) groL 374285..375913 (+) 1629 WP_003131585.1 chaperonin GroEL -
  HZ322_RS01885 (HZ322_01885) vicX 375959..376771 (-) 813 WP_003131583.1 MBL fold metallo-hydrolase Regulator
  HZ322_RS01890 (HZ322_01890) vicK 376940..378382 (-) 1443 WP_012897229.1 cell wall metabolism sensor histidine kinase WalK Regulator
  HZ322_RS01895 (HZ322_01895) yycF 378375..379076 (-) 702 WP_003131580.1 response regulator YycF -
  HZ322_RS01900 (HZ322_01900) tmk 379254..379889 (+) 636 WP_012897230.1 dTMP kinase -
  HZ322_RS01905 (HZ322_01905) - 380022..380882 (+) 861 WP_003131573.1 DNA polymerase III subunit delta' -
  HZ322_RS01910 (HZ322_01910) yaaT 380934..381716 (+) 783 WP_017864130.1 stage 0 sporulation family protein Regulator

Sequence

Protein


Download         Length: 270 a.a.        Molecular weight: 30522.37 Da        Isoelectric Point: 5.8494

>NTDB_id=408413 HZ322_RS01885 WP_003131583.1 375959..376771(-) (vicX) [Lactococcus lactis strain N8]
MTEQNGFKYSILASGSTGNSFYLETPKKKILVDAGLSGKKIESLLSEIDRDIHDIDALLITHEHSDHIKGIGVLARKYGI
DLYANEDTWSELDSKNALGKIPVEQKHLFEMGKTMTFGDIDIESFGVSHDAIAPQFYRFMKDNKSFVMLTDTGYVSDRMR
GTIENADAYLMESNHDIEILRMGAYPWRTKQRILSDQGHLSNEDGAEAAFSIHGNKTKRIFLGHLSLNNNIKELAHLTMD
GYLQQHDVDTKKDLKILDTSHEHASQLYDI

Nucleotide


Download         Length: 813 bp        

>NTDB_id=408413 HZ322_RS01885 WP_003131583.1 375959..376771(-) (vicX) [Lactococcus lactis strain N8]
ATGACTGAACAAAATGGCTTTAAATATTCCATTTTAGCCTCTGGTTCAACAGGAAATTCTTTTTACTTAGAAACTCCAAA
GAAAAAAATTCTTGTTGATGCCGGACTATCTGGAAAAAAAATAGAAAGTTTACTATCAGAAATTGACCGTGACATTCATG
ATATTGATGCTTTATTAATTACCCATGAACATAGTGACCATATCAAAGGGATTGGTGTTTTAGCAAGAAAATATGGTATT
GACCTTTACGCAAATGAAGATACTTGGTCTGAACTAGATAGTAAAAATGCTTTAGGAAAAATCCCTGTTGAACAAAAACA
TCTGTTTGAAATGGGAAAAACAATGACTTTTGGTGATATTGATATTGAATCTTTCGGCGTGAGTCACGATGCTATCGCAC
CACAGTTTTATCGTTTCATGAAAGATAACAAAAGTTTTGTTATGCTAACTGATACAGGTTATGTATCCGATAGAATGCGT
GGAACCATTGAAAATGCAGATGCTTATCTTATGGAATCAAACCATGACATTGAGATACTCCGCATGGGAGCCTATCCTTG
GCGGACAAAGCAACGTATCCTAAGTGACCAAGGCCACTTATCTAATGAGGACGGCGCTGAGGCTGCTTTTAGTATTCATG
GTAATAAGACAAAACGAATTTTTCTAGGGCACTTGAGTTTAAATAATAATATCAAAGAACTTGCTCATCTTACTATGGAT
GGTTACTTACAGCAACATGATGTCGATACCAAAAAGGACTTGAAGATCCTTGATACTAGTCACGAACATGCTAGTCAACT
TTACGATATTTAG

Domains

Predicted by InterProScan.

Beta-lactamase superfamily domain (Lactamase_B_2)

(29-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9CIG7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

68.519

100

0.685