Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   GPX85_RS07500 Genome accession   NZ_CP046822
Coordinates   797130..797648 (+) Length   172 a.a.
NCBI ID   WP_154169135.1    Uniprot ID   -
Organism   Vibrio metschnikovii strain 07-2421     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 792130..802648
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPX85_RS07490 - 792322..795174 (+) 2853 WP_158137835.1 M16 family metallopeptidase -
  GPX85_RS07495 gshA 795445..797013 (+) 1569 WP_154169137.1 glutamate--cysteine ligase -
  GPX85_RS07500 luxS 797130..797648 (+) 519 WP_154169135.1 S-ribosylhomocysteine lyase Regulator
  GPX85_RS07505 - 797741..799015 (-) 1275 WP_154169133.1 HlyC/CorC family transporter -
  GPX85_RS07510 - 799323..800117 (-) 795 WP_154169131.1 inner membrane protein YpjD -
  GPX85_RS07515 ffh 800330..801700 (+) 1371 WP_004395978.1 signal recognition particle protein -
  GPX85_RS07520 rpsP 801937..802185 (+) 249 WP_004395977.1 30S ribosomal protein S16 -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19012.81 Da        Isoelectric Point: 5.1825

>NTDB_id=408409 GPX85_RS07500 WP_154169135.1 797130..797648(+) (luxS) [Vibrio metschnikovii strain 07-2421]
MPLLDSFTVDHTRMQAPAVRVAKTMQTPKGDTITVFDLRFTLPNQAILSEKGIHTLEHLYAGFMRNHLNSEQVEIIDISP
MGCRTGFYMSLIGAPTEQQVATAWLAAMEDVLKVRDQKDIPELNEYQCGTAAMHSLSEAQAIAQQVLSSGIGVNKNDQLA
LPESMLKNLQVN

Nucleotide


Download         Length: 519 bp        

>NTDB_id=408409 GPX85_RS07500 WP_154169135.1 797130..797648(+) (luxS) [Vibrio metschnikovii strain 07-2421]
ATGCCACTACTAGATAGCTTTACGGTTGATCATACTCGCATGCAAGCTCCCGCTGTACGGGTAGCGAAAACCATGCAAAC
CCCGAAAGGCGATACGATTACTGTATTTGACCTGCGTTTTACTCTGCCTAACCAAGCTATTTTGTCTGAAAAAGGAATTC
ATACTCTAGAGCACCTTTATGCGGGGTTCATGCGTAATCATCTTAATAGCGAACAGGTGGAAATTATTGATATTTCCCCA
ATGGGCTGTCGTACTGGATTTTATATGAGTTTGATTGGTGCACCTACCGAGCAGCAAGTGGCTACGGCGTGGTTAGCCGC
GATGGAAGATGTCTTGAAAGTGCGGGACCAAAAGGATATTCCAGAACTCAATGAGTACCAGTGCGGTACCGCAGCGATGC
ACTCTTTATCGGAAGCACAAGCGATCGCTCAGCAAGTATTAAGTAGCGGTATTGGGGTGAACAAAAATGATCAACTTGCT
TTACCTGAATCGATGCTAAAAAACCTACAAGTGAATTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

84.302

100

0.843

Multiple sequence alignment