Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   GPX85_RS02150 Genome accession   NZ_CP046821
Coordinates   493783..494874 (+) Length   363 a.a.
NCBI ID   WP_158137234.1    Uniprot ID   -
Organism   Vibrio metschnikovii strain 07-2421     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 488783..499874
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPX85_RS02120 glpK 489652..491172 (+) 1521 WP_004396681.1 glycerol kinase GlpK -
  GPX85_RS02125 - 491275..491526 (-) 252 WP_072670703.1 YgjV family protein -
  GPX85_RS02130 - 491850..492179 (-) 330 WP_004396679.1 DUF496 family protein -
  GPX85_RS02135 - 492570..492773 (+) 204 WP_040905109.1 hypothetical protein -
  GPX85_RS02140 - 492816..493448 (+) 633 WP_004396678.1 YceH family protein -
  GPX85_RS02145 - 493451..493732 (+) 282 WP_158137233.1 GIY-YIG nuclease family protein -
  GPX85_RS02150 luxP 493783..494874 (+) 1092 WP_158137234.1 substrate-binding domain-containing protein Regulator
  GPX85_RS02155 luxQ 494932..497463 (+) 2532 WP_199249677.1 LuxQ periplasmic sensor domain-containing protein Regulator
  GPX85_RS02160 - 497527..498050 (-) 524 Protein_419 hypothetical protein -
  GPX85_RS02165 modA 498240..499022 (+) 783 WP_158137236.1 molybdate ABC transporter substrate-binding protein -
  GPX85_RS02170 modB 499003..499701 (+) 699 WP_050782752.1 molybdate ABC transporter permease subunit -

Sequence

Protein


Download         Length: 363 a.a.        Molecular weight: 41519.21 Da        Isoelectric Point: 6.2301

>NTDB_id=408389 GPX85_RS02150 WP_158137234.1 493783..494874(+) (luxP) [Vibrio metschnikovii strain 07-2421]
MKIRLLIVLLSWFPMAVFANPSQLLSDYWSYQAFLEAHPEQQTLTDLLAKSVQTRAEPLPLAQTRPVTISVIYPGQQVSD
YWSRNIKAFEARMHELGITYQLHQVFTRPSLDARQQSISLMEAMQNKTDYLIFTLDTMRHRKFIDHLLHTSETKVILQNI
TTPIRDWQGRQPLLYVGFDHEIGAQHLAEFYQRKLPQGADYAVLYFSEGYISEARGDSFIHNVKHRFHLASSYYTTATME
SGYQATLDIVSNNPQITFLYACSTDIALGAAQALRELEREDIYLNGWGGGSAELEALQDGRLAVTVMRMNDDTGIAMAEA
IKRDLAGLPVPLVYSGEFELVTQNTTIEHIERLKQRAFRYSDR

Nucleotide


Download         Length: 1092 bp        

>NTDB_id=408389 GPX85_RS02150 WP_158137234.1 493783..494874(+) (luxP) [Vibrio metschnikovii strain 07-2421]
ATGAAAATAAGACTGCTGATCGTGTTACTGAGTTGGTTTCCTATGGCCGTGTTCGCTAATCCCTCACAACTGCTGAGTGA
TTACTGGTCCTATCAAGCGTTTTTAGAGGCACATCCCGAGCAACAGACATTAACCGATTTATTGGCGAAAAGTGTCCAGA
CTCGAGCCGAACCCCTACCTCTAGCTCAAACTCGCCCAGTCACGATTTCAGTCATCTATCCCGGTCAGCAAGTGTCGGAC
TATTGGTCTCGTAATATTAAAGCGTTTGAAGCTCGTATGCATGAGCTTGGCATTACATATCAATTACACCAAGTTTTTAC
TCGACCTAGCTTAGATGCCCGTCAGCAAAGTATCTCCTTAATGGAAGCGATGCAAAATAAAACCGATTATCTGATTTTTA
CCTTAGATACCATGCGCCATCGAAAATTTATTGATCATCTACTGCATACCTCTGAGACAAAAGTCATTTTACAAAATATC
ACCACGCCCATTCGTGATTGGCAAGGTCGTCAGCCTTTATTGTATGTTGGGTTTGACCATGAAATTGGCGCTCAGCATTT
GGCTGAGTTTTACCAACGCAAGCTGCCACAAGGCGCAGATTATGCGGTGTTATATTTTTCAGAAGGGTACATCAGTGAAG
CGCGTGGAGACAGTTTTATCCATAATGTCAAACACCGTTTTCATTTAGCCTCGTCTTACTACACCACCGCCACGATGGAG
AGCGGCTATCAAGCGACGCTCGATATCGTTAGTAATAATCCTCAAATTACCTTTCTCTATGCTTGTTCGACCGATATTGC
GCTTGGAGCAGCACAAGCCTTGCGAGAACTTGAACGTGAAGATATCTATCTCAATGGCTGGGGGGGAGGTTCGGCAGAAC
TTGAGGCATTGCAAGATGGCCGATTAGCGGTCACCGTCATGCGTATGAATGACGATACGGGCATTGCGATGGCAGAAGCC
ATCAAACGAGATCTGGCTGGTTTGCCAGTGCCACTGGTTTACTCTGGTGAATTTGAACTGGTGACTCAAAATACCACCAT
TGAACACATTGAACGACTCAAACAACGTGCGTTTCGATATTCTGATCGCTAA

Domains

Predicted by InterproScan.

Periplasmic binding protein domain (Peripla_BP_4)

(69-325)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

64.85

100

0.656

Multiple sequence alignment