Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   GPY06_RS14760 Genome accession   NZ_CP046820
Coordinates   1926518..1927036 (+) Length   172 a.a.
NCBI ID   WP_001130222.1    Uniprot ID   A0A271VU94
Organism   Vibrio metoecus strain 2011V-1015     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1921518..1932036
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY06_RS14750 - 1921924..1924779 (+) 2856 WP_158120314.1 M16 family metallopeptidase -
  GPY06_RS14755 gshA 1924891..1926465 (+) 1575 WP_158120315.1 glutamate--cysteine ligase -
  GPY06_RS14760 luxS 1926518..1927036 (+) 519 WP_001130222.1 S-ribosylhomocysteine lyase Regulator
  GPY06_RS14765 - 1927120..1928400 (-) 1281 WP_055029844.1 HlyC/CorC family transporter -
  GPY06_RS14770 - 1928483..1929277 (-) 795 WP_000369276.1 cytochrome C assembly family protein -
  GPY06_RS14775 ffh 1929490..1930878 (+) 1389 WP_055029846.1 signal recognition particle protein -
  GPY06_RS14780 rpsP 1931114..1931362 (+) 249 WP_000256449.1 30S ribosomal protein S16 -
  GPY06_RS14785 rimM 1931387..1931941 (+) 555 WP_000061901.1 ribosome maturation factor RimM -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18945.81 Da        Isoelectric Point: 5.5455

>NTDB_id=408378 GPY06_RS14760 WP_001130222.1 1926518..1927036(+) (luxS) [Vibrio metoecus strain 2011V-1015]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTLPNKDILSERGIHTLEHLYAGFMRAHLNGGQVEIIDISP
MGCRTGFYMSLIGAPTEQQVAQAWLAAMQDVLKVESQDKIPELNEYQCGTAAMHSLEEAKGIAQKVIAAGISVNRNDELA
LPDAMLNELKVH

Nucleotide


Download         Length: 519 bp        

>NTDB_id=408378 GPY06_RS14760 WP_001130222.1 1926518..1927036(+) (luxS) [Vibrio metoecus strain 2011V-1015]
ATGCCATTACTAGACAGTTTTACGGTTGATCACACTCGGATGAATGCCCCGGCTGTGCGTGTTGCGAAAACCATGCAAAC
CCCAAAAGGGGATACGATTACCGTATTTGATTTGCGCTTTACTCTTCCAAACAAAGACATTCTGTCTGAGCGCGGTATTC
ATACCTTAGAGCATTTGTACGCGGGTTTTATGCGTGCTCATCTCAATGGTGGCCAAGTGGAAATCATTGATATCTCTCCG
ATGGGGTGTCGTACCGGTTTCTACATGAGCCTGATTGGGGCACCAACAGAGCAGCAAGTCGCGCAGGCTTGGCTAGCCGC
GATGCAAGATGTGTTAAAAGTGGAAAGCCAAGATAAAATTCCTGAGCTCAACGAATACCAATGCGGCACAGCCGCAATGC
ATTCGCTAGAAGAAGCCAAAGGCATTGCGCAGAAAGTGATTGCGGCGGGTATCTCGGTAAATCGCAACGATGAGCTGGCG
CTGCCTGACGCTATGCTTAATGAACTCAAGGTTCACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A271VU94

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

94.186

100

0.942

Multiple sequence alignment