Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   GPY06_RS14620 Genome accession   NZ_CP046820
Coordinates   1898960..1899970 (+) Length   336 a.a.
NCBI ID   WP_055029829.1    Uniprot ID   A0A0Q0W5U6
Organism   Vibrio metoecus strain 2011V-1015     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 1893960..1904970
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY06_RS14585 ftsB 1894008..1894292 (+) 285 WP_055029823.1 cell division protein FtsB -
  GPY06_RS14590 ispD 1894289..1894987 (+) 699 WP_158120300.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  GPY06_RS14595 ispF 1894984..1895460 (+) 477 WP_055029825.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  GPY06_RS14600 truD 1895490..1896575 (+) 1086 WP_158120301.1 tRNA pseudouridine(13) synthase TruD -
  GPY06_RS14605 surE 1896577..1897329 (+) 753 WP_055029827.1 5'/3'-nucleotidase SurE -
  GPY06_RS14610 - 1897322..1897948 (+) 627 WP_158120302.1 protein-L-isoaspartate(D-aspartate) O-methyltransferase -
  GPY06_RS14615 nlpD 1897948..1898886 (+) 939 WP_158120303.1 murein hydrolase activator NlpD -
  GPY06_RS14620 rpoS 1898960..1899970 (+) 1011 WP_055029829.1 RNA polymerase sigma factor RpoS Regulator
  GPY06_RS14625 mutS 1900049..1902637 (-) 2589 WP_158120304.1 DNA mismatch repair protein MutS -
  GPY06_RS14630 cysM 1902904..1903791 (-) 888 WP_158120305.1 cysteine synthase CysM -

Sequence

Protein


Download         Length: 336 a.a.        Molecular weight: 38596.42 Da        Isoelectric Point: 4.3131

>NTDB_id=408375 GPY06_RS14620 WP_055029829.1 1898960..1899970(+) (rpoS) [Vibrio metoecus strain 2011V-1015]
MSVSNTVTKVEEFDFEDEALEVLEADDELSSDEELVAVEGASDDVREEFDASAKSLDATQMYLSEIGFSPLLTAEEEVLY
ARRALRGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALM
NQTRTIRLPIHVVKELNIYLRTARELSQRLDHEPTPEEIALELDRPVDDVTKMLRLNERISSVDTPIGGDGDKALLDILP
DSNNADPEFSTQDDDIRESLLNWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILVK
QGLNMEALFNVEYDVN

Nucleotide


Download         Length: 1011 bp        

>NTDB_id=408375 GPY06_RS14620 WP_055029829.1 1898960..1899970(+) (rpoS) [Vibrio metoecus strain 2011V-1015]
ATGAGTGTCAGCAATACTGTAACCAAAGTAGAAGAGTTCGATTTTGAAGATGAAGCACTGGAAGTGCTAGAAGCGGATGA
TGAACTCTCTAGTGATGAAGAATTAGTTGCTGTTGAAGGGGCAAGTGACGATGTTCGTGAGGAGTTTGATGCTTCTGCGA
AAAGTCTTGATGCCACCCAAATGTATCTCAGCGAAATTGGTTTTTCACCACTCCTTACCGCCGAAGAAGAAGTGCTCTAT
GCTCGCCGCGCTCTACGTGGTGACGAAGCAGCACGCAAACGCATGATTGAAAGTAACTTGCGTTTAGTGGTTAAAATTTC
ACGTCGCTACAGCAACCGTGGGTTAGCCCTGCTTGATCTGATTGAAGAAGGCAATCTCGGTTTGATTCGTGCGGTTGAGA
AATTCGATCCTGAACGTGGCTTCCGCTTCTCAACTTACGCCACATGGTGGATTCGTCAAACCATCGAACGTGCGCTGATG
AACCAAACCCGCACTATTCGTCTGCCTATCCATGTCGTCAAAGAGCTGAACATTTACCTGCGTACTGCGCGTGAATTGTC
CCAACGTCTTGACCACGAACCTACGCCAGAAGAAATTGCTCTTGAGCTGGATCGTCCCGTTGATGATGTGACCAAAATGT
TGCGACTCAACGAACGCATCAGCTCTGTGGATACACCAATTGGTGGCGATGGTGATAAAGCGTTGCTAGACATCTTGCCA
GATTCTAATAATGCGGATCCTGAGTTTTCCACTCAAGATGATGACATCCGTGAATCGCTGCTCAACTGGTTAGATGAACT
CAATCCAAAACAGAAAGAAGTGCTTGCTCGTCGTTTTGGTCTGTTGGGTTATGAGCCGTCCACCTTGGAAGAAGTAGGAC
GTGAGATCAATCTGACTCGTGAGCGTGTACGCCAAATTCAAGTGGAAGGGCTGCGTCGTTTGCGTGAGATTCTGGTCAAA
CAAGGTTTGAATATGGAAGCACTGTTTAACGTTGAATATGACGTCAATTAA

Domains

Predicted by InterproScan.

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(57-90)

Sigma-70 region 3 (Sigma70_r3)

(175-248)

Sigma-70 region 2 (Sigma70_r2)

(95-164)

Sigma-70, region 4 (Sigma70_r4)

(263-316)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0Q0W5U6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

98.503

99.405

0.979

Multiple sequence alignment