Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   GPY06_RS11450 Genome accession   NZ_CP046820
Coordinates   1241983..1242990 (-) Length   335 a.a.
NCBI ID   WP_032469940.1    Uniprot ID   -
Organism   Vibrio metoecus strain 2011V-1015     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1236983..1247990
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY06_RS11425 rraA 1237567..1238094 (-) 528 WP_055043486.1 ribonuclease E activity regulator RraA -
  GPY06_RS11430 - 1238169..1239086 (-) 918 WP_158120083.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -
  GPY06_RS11435 hslU 1239193..1240524 (-) 1332 WP_055043485.1 HslU--HslV peptidase ATPase subunit -
  GPY06_RS11440 hslV 1240581..1241132 (-) 552 WP_000208248.1 ATP-dependent protease subunit HslV -
  GPY06_RS11445 - 1241267..1241815 (-) 549 WP_000013359.1 SPOR domain-containing protein -
  GPY06_RS11450 cytR 1241983..1242990 (-) 1008 WP_032469940.1 DNA-binding transcriptional regulator CytR Regulator
  GPY06_RS11455 priA 1243298..1245502 (-) 2205 WP_158120084.1 primosomal protein N' -
  GPY06_RS11460 rpmE 1245757..1245975 (+) 219 WP_000643443.1 50S ribosomal protein L31 -
  GPY06_RS11465 - 1246286..1247563 (+) 1278 WP_055029186.1 malic enzyme-like NAD(P)-binding protein -
  GPY06_RS11470 metJ 1247646..1247963 (-) 318 WP_000796267.1 met regulon transcriptional regulator MetJ -

Sequence

Protein


Download         Length: 335 a.a.        Molecular weight: 37024.55 Da        Isoelectric Point: 7.0139

>NTDB_id=408363 GPY06_RS11450 WP_032469940.1 1241983..1242990(-) (cytR) [Vibrio metoecus strain 2011V-1015]
MATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEEAVLEAGYSPNSLARNLRRNESKTIVAIVPDICDPYFSEIIRG
IEDAAMEHGYLVLLGDSGQQKRRENSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLTQLGHKRVAQISGPQNAALCQFRHQGYQQALRRAGITMNPTYCTFGDFTFEAGAKAVRQLLSLPEQPTA
IFCHNDTMAIGAIQEAKRLGLRVPQDLSVVGFDDIQFAQYCDPPLTTISQPRYEIGRQAMLMMLELLRGHDVRAGSRLLE
TKLVVRESAAPPNKK

Nucleotide


Download         Length: 1008 bp        

>NTDB_id=408363 GPY06_RS11450 WP_032469940.1 1241983..1242990(-) (cytR) [Vibrio metoecus strain 2011V-1015]
ATGGCGACAATGAAGGATGTTGCCCAGCTTGCAGGTGTTTCAACCGCGACGGTGTCGCGTGCGTTGATGAATCCTGAGAA
AGTTTCTTCATCGACGCGTAAGCGTGTTGAAGAGGCGGTGCTGGAAGCGGGTTACTCACCGAATTCTTTAGCGCGCAATT
TGCGTCGTAATGAGTCAAAAACCATCGTTGCTATCGTGCCGGATATCTGTGATCCCTACTTTTCTGAGATCATTCGTGGG
ATTGAAGATGCGGCAATGGAGCACGGTTATCTGGTGTTATTGGGTGATAGTGGCCAGCAAAAGCGTCGGGAAAACTCCTT
CGTTAATCTGGTGTTTACCAAACAAGCTGACGGGATGCTGCTACTTGGCACGGATTTGCCATTTGATGTCAGTAAACCTG
AGCAGAAAAACCTGCCGCCAATGGTGATGGCGTGTGAATTCGCCCCCGAACTTGAGCTGCCTACCGTTCACATTGATAAC
CTGACTTCAGCGTTTGAAGCAGTGAACTACTTGACCCAACTGGGGCATAAGCGTGTGGCGCAGATTTCTGGCCCTCAAAA
TGCTGCATTGTGTCAATTCCGTCATCAAGGCTATCAACAGGCGCTACGTCGTGCTGGCATCACCATGAACCCGACTTACT
GCACTTTTGGCGATTTCACTTTTGAAGCCGGGGCGAAAGCGGTGCGTCAGCTCTTATCGTTACCGGAGCAGCCTACCGCG
ATTTTCTGCCACAATGACACGATGGCAATCGGTGCGATTCAGGAAGCGAAGCGACTTGGCTTGCGCGTACCGCAAGATCT
GTCGGTTGTCGGTTTTGATGATATTCAGTTTGCACAATACTGCGATCCTCCATTGACGACGATTTCTCAACCTCGCTATG
AAATTGGCCGCCAAGCCATGCTAATGATGTTAGAACTTCTGCGTGGACATGATGTGCGTGCTGGCTCGCGTCTCTTGGAG
ACCAAGTTGGTCGTACGTGAGAGTGCCGCGCCACCCAACAAGAAATAG

Domains

Predicted by InterproScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(168-328)

Bacterial regulatory proteins, lacI family (LacI)

(3-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

98.806

100

0.988
  cytR Vibrio parahaemolyticus RIMD 2210633

90.419

99.701

0.901

Multiple sequence alignment