Detailed information    

insolico Bioinformatically predicted

Overview

Name   tfoS   Type   Regulator
Locus tag   GPY06_RS08590 Genome accession   NZ_CP046820
Coordinates   646779..650126 (-) Length   1115 a.a.
NCBI ID   WP_167517840.1    Uniprot ID   -
Organism   Vibrio metoecus strain 2011V-1015     
Function   chitin sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 641779..655126
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY06_RS08570 - 642962..643399 (+) 438 WP_095476308.1 HIT family protein -
  GPY06_RS08575 - 643505..643735 (-) 231 WP_055035437.1 FeoC-like transcriptional regulator -
  GPY06_RS08580 feoB 643732..646008 (-) 2277 WP_158119891.1 Fe(2+) transporter permease subunit FeoB -
  GPY06_RS08585 - 646005..646235 (-) 231 WP_000777867.1 FeoA family protein -
  GPY06_RS08590 tfoS 646779..650126 (-) 3348 WP_167517840.1 helix-turn-helix domain-containing protein Regulator
  GPY06_RS08595 znuA 650326..651210 (-) 885 WP_158119893.1 zinc ABC transporter substrate-binding protein ZnuA -
  GPY06_RS08600 znuC 651293..652081 (+) 789 WP_000212416.1 zinc ABC transporter ATP-binding protein ZnuC -
  GPY06_RS08605 znuB 652074..652856 (+) 783 WP_158119894.1 zinc ABC transporter permease subunit ZnuB -
  GPY06_RS08610 sucD 652944..653816 (-) 873 WP_000025475.1 succinate--CoA ligase subunit alpha -
  GPY06_RS08615 sucC 653816..654982 (-) 1167 WP_158119895.1 ADP-forming succinate--CoA ligase subunit beta -

Sequence

Protein


Download         Length: 1115 a.a.        Molecular weight: 126782.39 Da        Isoelectric Point: 7.1171

>NTDB_id=408353 GPY06_RS08590 WP_167517840.1 646779..650126(-) (tfoS) [Vibrio metoecus strain 2011V-1015]
MYRTLLYSFLLNLIFPSLVLALDKSMSVFYPLPIQEQGKVIVAQNLYLGTDGGIWMHDVHGKVMYFDGQNILPRRGSVLP
QTSSHIVYANSAFWTFEQHELFRTYPAGHKELMLSLTPGTQINQIGSSNGMIWMTDNDNFYSYEIRSGRVSTLSLHELYQ
LNSASTVVINDAQFLVSKWALATNVGVYLSDEQGFSHVKKSGKHFVQKLYFSHKRRELLVGSKRGALIIDIENKRSLPDR
IGSSHVLSMAETEKEYWVGTEEGLYVYSFITGKIVQLESNSNNEYALLGKKIYAMVNDFQGGMWIATDKGVFYYSLFGQQ
FTRYPTQALSNDGSKAQISKIKALNSDGDYLAITQQGLYNFNVADDLRKHLIYPGKVNDFAINGENIWIATDKGLARYNL
SRRSLDTPHLPLALLQTPVEHLTMDGSGNLWGSSNHQIWSYSIIQQSFVDYGSEWMVKQFSPSRITFLAAVEQGIVIGTE
HGAYSLFGKQIRFDFSSHRYGEIVQVAQNALGDVWIIGAYGVFLWHQDQPEAVPVELIEENIQPLCIAESKQGMWFISSQ
GISHYSDQGQLNKNFSAPYGLISHEFLPASCAVGEEKESSSLVIGSQLGIVKVNTEELAVSNLPNIQVMFSQVSVNHRPK
LLGYRTPHPLKIRYGDAISFQFGALPSARSQSLEYKLNDDQQWQRFDWALLSFDKLLPGKYRLKVRSANPIQRYRTEALF
DFEVMEPWYMTSVAIVGYVVALFGLLAVAFWWRTRMIVGANRKLKAQVDLKTSQLRHQSKIVLSNNHQLRKQLQLHHNLL
GKVLESVDPSLRHLSSYAKVRGWNEFDAPLNKVKQELAQLHFMHRGDAEESKFHDLHLLIESAFKSWQEEYSKAAIKLIY
HGETRFIEVRQFNLDVLFNAILTDAIKRLYKYQELQIQLEARDEQAVLIFSDFGSPIQNLGSMLVTLTGFGTYPLQELIS
RSGGELRVLVLKERNVIELAWPLASIPEIESLKQEVVEIEQKSAIDDVEKEWLSKLEKLIEQNYSDPNFTTSTAAQSLYV
SERSLQRRFKAATGKTFKESLNELRLEKACQSLLSGAKIAQVAFDCGFNDPSYFSQRFKHHFGLSPSQFIEDQES

Nucleotide


Download         Length: 3348 bp        

>NTDB_id=408353 GPY06_RS08590 WP_167517840.1 646779..650126(-) (tfoS) [Vibrio metoecus strain 2011V-1015]
GTGTATCGCACATTGTTATACAGCTTCTTGCTGAATCTTATTTTTCCTTCACTGGTGTTGGCTTTAGATAAGTCAATGTC
AGTTTTTTATCCTTTGCCAATCCAAGAGCAGGGGAAAGTCATTGTTGCTCAAAACCTCTATCTTGGTACGGATGGCGGTA
TCTGGATGCATGATGTGCATGGAAAAGTCATGTATTTTGATGGGCAAAATATCCTGCCCCGTCGTGGTTCTGTACTTCCG
CAAACGTCGAGTCACATTGTTTACGCAAATAGTGCTTTTTGGACATTTGAACAACATGAATTGTTTCGAACCTATCCTGC
GGGGCACAAGGAGTTGATGTTAAGCCTAACGCCAGGAACCCAAATCAATCAGATTGGCTCATCGAACGGTATGATCTGGA
TGACAGATAATGACAATTTCTACAGCTATGAAATTCGAAGTGGGCGAGTATCGACTCTTTCACTGCATGAGTTATATCAA
TTGAATAGCGCTAGTACGGTTGTCATAAATGATGCACAGTTCTTGGTTTCAAAGTGGGCGTTAGCGACGAATGTGGGTGT
TTATTTGTCTGACGAACAAGGCTTTTCTCATGTAAAAAAATCCGGAAAACATTTTGTTCAGAAGCTTTATTTCTCTCATA
AACGCCGAGAATTATTGGTTGGCTCTAAGCGCGGAGCGTTAATTATTGATATTGAAAACAAGCGCTCACTACCTGATCGA
ATTGGCTCATCGCATGTCCTATCCATGGCGGAAACAGAAAAAGAGTATTGGGTTGGCACCGAAGAGGGTCTTTATGTTTA
CTCCTTTATTACGGGAAAAATAGTTCAATTAGAAAGTAATAGTAATAATGAGTACGCTCTACTGGGTAAAAAAATCTATG
CGATGGTGAATGATTTTCAGGGGGGAATGTGGATCGCAACCGATAAAGGTGTGTTCTATTATTCTTTATTTGGGCAGCAG
TTTACGCGTTACCCTACTCAAGCATTATCGAACGACGGTAGTAAGGCACAGATCAGTAAAATCAAGGCATTAAACTCGGA
TGGTGATTATTTGGCCATCACACAGCAAGGGTTGTATAACTTCAATGTCGCTGATGATTTACGTAAACACCTCATCTATC
CCGGTAAGGTCAACGACTTTGCCATCAACGGTGAGAATATATGGATAGCAACAGACAAAGGATTAGCTCGTTATAATCTT
TCTCGTCGTAGTCTCGATACTCCTCATCTACCGCTAGCATTGCTACAAACACCAGTTGAACACCTCACTATGGACGGCAG
CGGTAACTTGTGGGGTTCAAGTAATCACCAGATTTGGTCATATTCAATCATTCAGCAAAGCTTTGTGGATTATGGTTCGG
AATGGATGGTTAAACAATTTTCACCATCTCGAATCACCTTTCTTGCCGCTGTAGAGCAAGGCATTGTTATTGGCACTGAG
CATGGCGCTTACTCTTTATTTGGAAAACAGATTCGTTTCGATTTCTCCAGTCATCGTTATGGTGAAATTGTGCAAGTGGC
GCAAAATGCCTTGGGTGATGTCTGGATTATTGGCGCTTATGGTGTTTTTTTGTGGCATCAAGATCAACCGGAAGCGGTAC
CAGTAGAATTAATTGAAGAGAATATTCAACCTCTGTGTATTGCTGAATCCAAACAAGGTATGTGGTTTATTTCATCGCAG
GGAATAAGCCACTATAGCGACCAAGGTCAATTGAATAAAAACTTTAGCGCCCCTTATGGTTTAATCAGCCATGAATTTCT
TCCCGCTTCTTGCGCAGTCGGTGAAGAAAAAGAAAGTTCATCTCTGGTTATTGGTTCACAATTGGGAATAGTGAAAGTCA
ACACGGAAGAATTGGCAGTATCAAATTTACCTAATATTCAGGTTATGTTTAGCCAAGTGAGCGTTAACCATAGGCCTAAG
TTGTTGGGGTATCGTACCCCCCATCCTCTGAAGATTCGTTATGGCGATGCGATCAGTTTCCAGTTTGGGGCTTTGCCTTC
TGCGCGCAGCCAATCGTTAGAATACAAATTGAATGATGATCAACAGTGGCAACGATTTGATTGGGCTCTGTTGAGTTTTG
ATAAGTTATTACCCGGTAAATATCGCCTAAAAGTGCGTAGTGCAAACCCTATTCAGCGCTATCGAACGGAAGCTTTGTTT
GATTTTGAAGTGATGGAGCCTTGGTACATGACTTCAGTGGCGATTGTTGGTTATGTTGTGGCTTTATTCGGGCTACTTGC
TGTGGCGTTTTGGTGGCGAACCCGCATGATTGTTGGCGCTAACCGAAAGTTAAAGGCGCAAGTTGATCTGAAAACGAGTC
AGTTGCGCCATCAAAGTAAAATAGTATTGAGCAATAACCATCAATTGCGAAAGCAACTACAACTTCACCACAATTTATTA
GGAAAGGTTTTAGAGAGCGTAGACCCATCATTACGGCACCTATCTTCGTATGCCAAAGTTCGAGGTTGGAATGAGTTTGA
CGCTCCCCTGAATAAAGTGAAGCAAGAATTGGCACAGTTGCACTTTATGCATCGTGGTGATGCAGAGGAGAGTAAGTTTC
ATGATTTACACTTACTGATCGAGTCAGCCTTCAAGAGTTGGCAGGAAGAGTACAGTAAAGCGGCAATCAAGCTTATTTAC
CACGGTGAAACTCGCTTTATCGAAGTCCGCCAATTTAATCTTGATGTACTGTTTAACGCGATTTTGACGGATGCGATTAA
ACGACTTTATAAATATCAAGAATTACAGATCCAACTAGAAGCGAGAGATGAACAAGCCGTTCTCATTTTTTCTGATTTTG
GTTCACCGATTCAAAATCTTGGATCAATGTTGGTGACATTAACAGGTTTTGGCACCTATCCATTACAGGAACTCATTAGT
CGAAGTGGTGGGGAGCTGCGAGTATTAGTTCTGAAAGAGCGCAATGTGATTGAGCTCGCGTGGCCACTCGCCTCGATTCC
AGAGATCGAATCGCTCAAGCAAGAAGTGGTTGAAATCGAACAGAAGTCAGCCATTGATGATGTGGAAAAAGAGTGGTTGA
GTAAGCTGGAAAAGCTTATTGAGCAAAATTACAGTGATCCTAACTTTACGACATCAACGGCAGCACAATCCCTCTATGTT
TCCGAGCGTAGTTTGCAGCGTCGCTTCAAAGCCGCAACGGGAAAAACATTTAAAGAATCATTGAATGAGTTGCGTTTGGA
GAAAGCCTGCCAGAGTTTATTGAGTGGGGCAAAAATTGCTCAAGTGGCCTTTGACTGTGGATTTAATGACCCTTCCTACT
TTAGCCAACGTTTTAAACATCACTTTGGTTTATCTCCGAGTCAATTTATTGAAGATCAAGAATCTTAA

Domains

Predicted by InterproScan.

Helix-turn-helix domain (HTH_18)

(1035-1110)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tfoS Vibrio cholerae O1 biovar El Tor strain E7946

81.362

100

0.814

Multiple sequence alignment