Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsS   Type   Regulator
Locus tag   GPX95_RS18650 Genome accession   NZ_CP046818
Coordinates   1150860..1152908 (+) Length   682 a.a.
NCBI ID   WP_095470325.1    Uniprot ID   -
Organism   Vibrio metoecus strain 06-2478     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 1145860..1157908
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPX95_RS18640 - 1146567..1147705 (+) 1139 Protein_1037 exonuclease SbcCD subunit D -
  GPX95_RS18645 - 1147707..1150748 (+) 3042 WP_055030883.1 AAA family ATPase -
  GPX95_RS18650 cqsS 1150860..1152908 (+) 2049 WP_095470325.1 quorum-sensing CAI-1 autoinducer sensor kinase/phosphatase CqsS Regulator

Sequence

Protein


Download         Length: 682 a.a.        Molecular weight: 77911.85 Da        Isoelectric Point: 5.1220

>NTDB_id=408340 GPX95_RS18650 WP_095470325.1 1150860..1152908(+) (cqsS) [Vibrio metoecus strain 06-2478]
MDVIKKVYQYAEPNLSLVGWMGMLGFPAYYFIWEYWFPQVYENLGLRCAAAVLFSGLAFRGSFPKKWQRYMPHYFLLTIG
FCLPFFFCFMMLMNDWSTIWAMSFMASIFLHILLVHDTKVMALQAIFSVLMAYLAVYGFTDFRPSTLIEWPYIPVFLFTY
VFGNLCFFRNQISHETKVSIAKTFGAGIAHEMRNPLSALKTSIDVIRTMIPKPQAAAQAAYPLDAQELDLLHQILNEADD
VIYSGNNTIDLLLTSIDENRVSTASFKKYSAADVIEKALKTFPYKNVADQHAVQLEVIQPFDFFGSDTLLSYALFNLLKN
AFYYQKEQFFVRIQIEQSDECNLIKVRDNGVGIASEMLEDIFRDFYTFGKNGSYGLGLPFCRKVMTAFGGSIRCFSQQGE
WTEFVLAFPRYDSDVVQDIKADLLKSKSLIYIGSNQAIVRELNQLALEDEFKFTAISAVQAVRRQDYEFEFDLILLDLDE
ATAQGELLPKLEGTLSFTEGCIGYVYDPAKEYAVNINRYLHIQPISIHAVLRKPRSIIDRLLFEQDSLLMNRNAIPVQKS
RHERRILVVDDNQSIRTFTSILLEQQGYEVIQANDGSEVLTHMDEHTIDLVLMDIEMPNVGGLEATHLIRSSDRAYKNIP
IIGYTGDNSPKTLALIQTSGMNDFIVKPADRDVLLNKVAAWV

Nucleotide


Download         Length: 2049 bp        

>NTDB_id=408340 GPX95_RS18650 WP_095470325.1 1150860..1152908(+) (cqsS) [Vibrio metoecus strain 06-2478]
ATGGATGTGATAAAGAAAGTTTACCAGTACGCAGAACCCAATCTTTCTTTAGTAGGATGGATGGGGATGCTTGGCTTTCC
AGCCTACTATTTCATTTGGGAATACTGGTTTCCACAAGTCTATGAAAACTTAGGTTTGCGTTGTGCTGCGGCGGTATTGT
TTTCTGGGTTGGCGTTTCGTGGGTCATTCCCTAAAAAATGGCAGCGCTACATGCCGCACTATTTTTTGTTGACCATAGGC
TTCTGTTTGCCTTTTTTCTTTTGTTTCATGATGTTAATGAACGATTGGTCAACGATTTGGGCTATGTCGTTCATGGCATC
GATATTTCTGCACATCTTACTTGTGCATGATACAAAAGTGATGGCACTACAAGCTATCTTCTCTGTGTTGATGGCTTACC
TTGCAGTGTATGGCTTTACGGATTTTCGTCCCTCAACCTTGATTGAGTGGCCGTATATTCCCGTTTTTTTGTTTACTTAT
GTTTTTGGCAATCTGTGTTTCTTTCGTAACCAGATTTCTCATGAAACCAAAGTCTCCATTGCTAAAACCTTTGGGGCTGG
GATTGCGCATGAAATGCGTAATCCACTCAGTGCACTCAAAACGTCTATCGATGTTATTCGGACCATGATCCCAAAACCAC
AAGCGGCGGCTCAAGCTGCATACCCGCTGGATGCGCAAGAGCTGGATCTATTACATCAGATTTTGAATGAAGCCGATGAT
GTTATCTATTCTGGAAATAACACCATTGATTTATTGCTGACGTCGATCGATGAAAACCGTGTTTCTACCGCGAGTTTTAA
AAAATACTCTGCAGCCGATGTTATCGAAAAAGCTCTGAAAACGTTCCCGTATAAAAATGTGGCGGATCAGCACGCTGTTC
AGCTTGAAGTTATCCAACCGTTTGATTTTTTTGGCAGTGATACGTTATTGAGTTATGCATTGTTTAACTTATTGAAAAAT
GCCTTTTATTACCAAAAAGAACAATTCTTTGTGCGGATTCAGATTGAACAAAGTGACGAGTGTAACCTGATTAAAGTTCG
TGATAACGGTGTCGGGATCGCATCTGAAATGCTGGAAGATATTTTCCGTGATTTTTACACTTTCGGTAAAAATGGCAGCT
ATGGGCTTGGCTTACCATTTTGTCGAAAAGTGATGACGGCTTTTGGTGGCAGTATTCGTTGTTTTTCACAGCAAGGTGAA
TGGACGGAGTTTGTACTGGCGTTCCCTCGTTACGATTCTGATGTGGTACAAGACATTAAAGCGGATTTATTAAAGTCCAA
ATCTTTGATTTATATTGGGTCAAACCAAGCGATTGTTCGAGAGCTGAATCAATTAGCGCTAGAAGATGAGTTTAAATTCA
CGGCTATTTCTGCTGTACAGGCGGTGAGACGACAAGATTACGAATTTGAGTTTGATCTGATTTTGTTGGATTTGGATGAG
GCGACAGCGCAAGGCGAATTACTTCCTAAGCTGGAAGGCACATTAAGTTTTACAGAAGGCTGCATTGGCTATGTGTATGA
TCCGGCCAAAGAGTATGCCGTTAATATCAATCGATACTTACATATTCAACCGATAAGTATCCATGCGGTGCTTCGTAAAC
CTAGAAGTATCATAGATCGTTTATTGTTTGAACAAGATTCACTGTTGATGAATCGTAACGCGATTCCGGTGCAGAAGAGT
CGTCATGAGCGGCGAATTCTGGTGGTGGATGACAATCAATCCATCCGCACATTTACGTCTATCCTACTTGAACAGCAAGG
ATACGAAGTAATACAAGCGAATGATGGCAGCGAAGTCCTCACTCATATGGATGAACACACGATTGATCTGGTATTGATGG
ATATTGAAATGCCGAATGTGGGTGGATTAGAGGCCACTCACTTAATTCGCAGCTCTGATCGCGCTTATAAAAACATCCCA
ATTATAGGTTATACCGGTGATAACAGCCCGAAAACATTAGCGTTGATACAGACGTCGGGGATGAATGATTTTATTGTTAA
ACCCGCCGATCGTGATGTATTACTCAATAAAGTTGCAGCGTGGGTATAA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(309-409)

Response regulator receiver domain (Response_reg)

(566-678)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsS Vibrio cholerae strain A1552

87.83

100

0.878

Multiple sequence alignment