Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   GPX95_RS14310 Genome accession   NZ_CP046818
Coordinates   225176..226270 (-) Length   364 a.a.
NCBI ID   WP_055029466.1    Uniprot ID   -
Organism   Vibrio metoecus strain 06-2478     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 220176..231270
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPX95_RS14290 - 220649..221047 (+) 399 WP_055031908.1 YgiW/YdeI family stress tolerance OB fold protein -
  GPX95_RS14295 - 221257..221775 (+) 519 WP_055029468.1 hypothetical protein -
  GPX95_RS14300 - 221929..222594 (+) 666 WP_000268205.1 PilZ domain-containing protein -
  GPX95_RS14305 luxQ 222586..225156 (-) 2571 WP_158160277.1 quorum-sensing autoinducer 2 sensor kinase/phosphatase LuxQ Regulator
  GPX95_RS14310 luxP 225176..226270 (-) 1095 WP_055029466.1 autoinducer 2-binding periplasmic protein LuxP Regulator
  GPX95_RS14315 traF 226476..227635 (-) 1160 Protein_202 conjugal transfer protein TraF -
  GPX95_RS14320 - 227736..228041 (-) 306 WP_055027718.1 GIY-YIG nuclease family protein -
  GPX95_RS14325 - 228041..228690 (-) 650 Protein_204 YceH family protein -
  GPX95_RS14330 - 228732..228929 (-) 198 WP_001222790.1 hypothetical protein -
  GPX95_RS14335 - 229117..229437 (+) 321 WP_001089529.1 DUF496 family protein -
  GPX95_RS14340 - 229829..230080 (+) 252 WP_009355552.1 YgjV family protein -

Sequence

Protein


Download         Length: 364 a.a.        Molecular weight: 41412.22 Da        Isoelectric Point: 6.3133

>NTDB_id=408338 GPX95_RS14310 WP_055029466.1 225176..226270(-) (luxP) [Vibrio metoecus strain 06-2478]
MKKKLMFSLLLTAALFSAEGYADSLKGYWHYDEFLAEFPEQHQLTDQLAKTVRDKPIPLGIEQKQPVVISVVYPGQQISD
YWVRNIKAFEKRMDELGIRYQINQVFTRPNLDTRQQSVSLMEALKNKSDYLIFTLDTTRHRKFIEHVLQSSQTKLILQNI
TTPVKDWQGRQPMMYIGFDHELGALQLAKHYQAMAPSKPYSVLYFSEGYISEARGDTFIQQMNEAHRFQLASSYYTKATE
QSGYEATLNIVKNNPEIGFIYACATDIALGAAQALKELGRQDILLNGWGGGSAELEALANGELNMTVMRMNDDTGVAMAE
AIKWDLEGKMVPLVYSGDFEIVTQQDSAKHVEALKARAFRYSDR

Nucleotide


Download         Length: 1095 bp        

>NTDB_id=408338 GPX95_RS14310 WP_055029466.1 225176..226270(-) (luxP) [Vibrio metoecus strain 06-2478]
ATGAAAAAAAAGCTAATGTTCTCGCTGCTTTTAACAGCAGCACTCTTCAGTGCAGAAGGTTACGCCGATTCACTCAAAGG
TTATTGGCATTACGATGAGTTTCTCGCGGAGTTCCCCGAACAACATCAGTTGACGGATCAACTGGCGAAAACGGTTCGAG
ATAAACCGATCCCTCTTGGTATTGAGCAAAAACAACCCGTGGTGATTTCTGTTGTTTACCCAGGGCAACAAATCTCGGAC
TATTGGGTTCGGAACATCAAAGCTTTTGAAAAAAGGATGGATGAACTCGGGATTCGCTACCAAATTAATCAAGTCTTTAC
TCGCCCTAATCTCGATACTCGCCAACAAAGTGTTTCATTGATGGAAGCACTCAAAAACAAAAGCGATTATCTGATCTTTA
CACTAGATACGACGCGTCATCGCAAGTTTATTGAGCACGTACTACAGTCATCGCAAACTAAATTGATATTACAAAACATC
ACGACGCCAGTGAAAGATTGGCAAGGCCGACAGCCCATGATGTATATCGGTTTCGACCATGAGTTAGGGGCGCTGCAATT
AGCGAAACACTACCAAGCGATGGCTCCGAGCAAACCATACTCGGTACTCTATTTCTCTGAGGGCTATATCAGCGAAGCGC
GCGGAGATACGTTCATTCAACAAATGAATGAAGCGCACCGTTTTCAGCTCGCCTCTTCTTATTACACTAAGGCGACCGAG
CAAAGTGGGTATGAGGCGACCTTGAACATAGTCAAGAACAACCCAGAAATTGGGTTTATCTATGCGTGCGCCACAGACAT
TGCTTTGGGCGCAGCTCAAGCGTTAAAAGAACTGGGGCGGCAGGATATTCTACTCAATGGTTGGGGTGGGGGCTCTGCGG
AGTTGGAGGCGTTGGCCAATGGCGAACTCAATATGACCGTGATGCGTATGAACGATGATACGGGAGTGGCGATGGCGGAA
GCGATTAAATGGGATCTGGAAGGCAAAATGGTGCCTTTGGTATATTCCGGAGATTTTGAAATCGTGACTCAACAAGACTC
CGCCAAACACGTTGAAGCATTGAAAGCCCGCGCGTTCCGTTATTCAGATCGCTAG

Domains

Predicted by InterproScan.

Periplasmic binding protein domain (Peripla_BP_4)

(69-322)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

85.165

100

0.852

Multiple sequence alignment