Detailed information    

insolico Bioinformatically predicted

Overview

Name   irvR   Type   Regulator
Locus tag   H0A38_RS02725 Genome accession   NZ_CP059048
Coordinates   534709..535263 (-) Length   184 a.a.
NCBI ID   WP_058204350.1    Uniprot ID   -
Organism   Lactococcus lactis strain LAC460     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 529709..540263
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0A38_RS02700 (H0A38_02700) - 530660..531328 (+) 669 WP_033899653.1 hypothetical protein -
  H0A38_RS02705 (H0A38_02705) - 531499..532395 (+) 897 WP_003129543.1 SPFH domain-containing protein -
  H0A38_RS02715 - 533079..533288 (-) 210 WP_226319367.1 hypothetical protein -
  H0A38_RS02720 (H0A38_02720) - 534111..534698 (-) 588 WP_226319368.1 hypothetical protein -
  H0A38_RS02725 (H0A38_02725) irvR 534709..535263 (-) 555 WP_058204350.1 helix-turn-helix domain-containing protein Regulator
  H0A38_RS02730 (H0A38_02730) - 535815..535985 (-) 171 WP_165379817.1 hypothetical protein -
  H0A38_RS02735 (H0A38_02735) - 536051..536257 (+) 207 WP_058204351.1 helix-turn-helix transcriptional regulator -
  H0A38_RS02740 (H0A38_02740) - 536312..537063 (+) 752 Protein_509 phage antirepressor KilAC domain-containing protein -
  H0A38_RS02745 - 537168..537353 (+) 186 WP_226319369.1 phage replisome organizer N-terminal domain-containing protein -
  H0A38_RS02750 (H0A38_02745) - 537401..537988 (+) 588 WP_226319370.1 DnaD domain-containing protein -
  H0A38_RS02755 - 538196..538288 (+) 93 WP_081043124.1 DUF1660 family phage protein -
  H0A38_RS02760 (H0A38_02755) - 538372..538761 (+) 390 WP_058204354.1 DUF722 domain-containing protein -
  H0A38_RS02765 (H0A38_02760) - 539039..540196 (+) 1158 WP_058204355.1 glycoside hydrolase family protein -

Sequence

Protein


Download         Length: 184 a.a.        Molecular weight: 20952.69 Da        Isoelectric Point: 4.9034

>NTDB_id=408329 H0A38_RS02725 WP_058204350.1 534709..535263(-) (irvR) [Lactococcus lactis strain LAC460]
MGRGKSTPQDEAMRTIVSSNIKKYLDIKKKKAVDLQKNTGISQSSISEYINGKSLPNPGNLQKIADFFGVLREDIDPRHS
EDWEEPEELPDIIQRITDISMQLEEPRQKVVLNTASSQLKEQEKENAKVVSLRTEKQKQGIDLADLVDESKVDWDKWVSF
DGKPLTDEVKEAMKQVLGKQLEDK

Nucleotide


Download         Length: 555 bp        

>NTDB_id=408329 H0A38_RS02725 WP_058204350.1 534709..535263(-) (irvR) [Lactococcus lactis strain LAC460]
ATGGGACGTGGGAAATCAACTCCGCAAGATGAAGCAATGCGAACAATAGTTTCTTCTAATATAAAAAAATATTTAGATAT
AAAAAAGAAGAAAGCAGTTGACTTACAAAAGAATACAGGTATATCTCAAAGCTCAATTAGTGAATATATAAATGGTAAAT
CCCTACCTAATCCTGGTAATCTTCAAAAAATAGCTGATTTCTTCGGTGTTCTTAGAGAGGATATTGACCCTAGACATTCT
GAGGATTGGGAAGAACCTGAAGAATTGCCAGACATTATCCAACGAATAACTGATATATCTATGCAACTTGAAGAACCAAG
ACAAAAAGTCGTTCTTAATACTGCTTCTTCTCAATTGAAAGAGCAAGAAAAGGAAAATGCTAAGGTTGTATCTCTTAGAA
CTGAAAAACAAAAGCAAGGTATTGACCTTGCCGATTTAGTAGATGAAAGTAAAGTTGATTGGGATAAGTGGGTTTCATTT
GATGGTAAGCCATTAACTGATGAAGTTAAGGAAGCTATGAAACAAGTCCTTGGAAAGCAATTAGAAGACAAATAA

Domains

Predicted by InterProScan.

Helix-turn-helix (HTH_3)

(21-70)

Lactococcus bacteriophage repressor (Lac_bphage_repr)

(136-183)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  irvR Streptococcus mutans UA159

36.598

100

0.386