Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   GPX95_RS08610 Genome accession   NZ_CP046817
Coordinates   1874162..1875169 (+) Length   335 a.a.
NCBI ID   WP_032469940.1    Uniprot ID   -
Organism   Vibrio metoecus strain 06-2478     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1869162..1880169
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPX95_RS08590 metJ 1869189..1869506 (+) 318 WP_000796267.1 met regulon transcriptional regulator MetJ -
  GPX95_RS08595 - 1869589..1870866 (-) 1278 WP_055029186.1 malic enzyme-like NAD(P)-binding protein -
  GPX95_RS08600 rpmE 1871177..1871395 (-) 219 WP_000643443.1 50S ribosomal protein L31 -
  GPX95_RS08605 priA 1871650..1873854 (+) 2205 WP_055031395.1 primosomal protein N' -
  GPX95_RS08610 cytR 1874162..1875169 (+) 1008 WP_032469940.1 DNA-binding transcriptional regulator CytR Regulator
  GPX95_RS08615 - 1875337..1875885 (+) 549 WP_000013359.1 SPOR domain-containing protein -
  GPX95_RS08620 hslV 1876020..1876571 (+) 552 WP_000208248.1 ATP-dependent protease subunit HslV -
  GPX95_RS08625 hslU 1876628..1877959 (+) 1332 WP_055031397.1 HslU--HslV peptidase ATPase subunit -
  GPX95_RS08630 - 1878066..1878983 (+) 918 WP_158160153.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -
  GPX95_RS08635 rraA 1879058..1879579 (+) 522 WP_000456239.1 ribonuclease E activity regulator RraA -

Sequence

Protein


Download         Length: 335 a.a.        Molecular weight: 37024.55 Da        Isoelectric Point: 7.0139

>NTDB_id=408318 GPX95_RS08610 WP_032469940.1 1874162..1875169(+) (cytR) [Vibrio metoecus strain 06-2478]
MATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEEAVLEAGYSPNSLARNLRRNESKTIVAIVPDICDPYFSEIIRG
IEDAAMEHGYLVLLGDSGQQKRRENSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLTQLGHKRVAQISGPQNAALCQFRHQGYQQALRRAGITMNPTYCTFGDFTFEAGAKAVRQLLSLPEQPTA
IFCHNDTMAIGAIQEAKRLGLRVPQDLSVVGFDDIQFAQYCDPPLTTISQPRYEIGRQAMLMMLELLRGHDVRAGSRLLE
TKLVVRESAAPPNKK

Nucleotide


Download         Length: 1008 bp        

>NTDB_id=408318 GPX95_RS08610 WP_032469940.1 1874162..1875169(+) (cytR) [Vibrio metoecus strain 06-2478]
ATGGCGACAATGAAGGATGTTGCCCAGCTTGCAGGTGTTTCAACCGCGACGGTGTCGCGTGCGTTGATGAATCCTGAGAA
AGTTTCTTCATCGACGCGTAAGCGTGTTGAAGAGGCGGTGCTGGAAGCGGGTTACTCACCGAATTCTTTAGCGCGCAATT
TGCGTCGTAATGAGTCAAAAACCATCGTTGCTATCGTGCCGGATATCTGTGATCCCTACTTTTCTGAGATCATTCGTGGG
ATTGAAGATGCGGCAATGGAGCACGGTTATCTGGTGTTATTGGGTGATAGTGGCCAGCAAAAGCGTCGGGAAAACTCCTT
CGTTAATCTGGTGTTTACCAAACAAGCTGACGGGATGCTGCTACTTGGCACGGATTTGCCATTTGATGTCAGTAAACCTG
AACAGAAAAACCTGCCGCCAATGGTGATGGCATGTGAATTCGCCCCCGAACTTGAGCTGCCTACCGTTCACATTGATAAC
CTGACTTCAGCGTTTGAAGCAGTGAACTACTTGACCCAACTGGGGCATAAGCGTGTGGCGCAGATTTCTGGCCCTCAAAA
TGCTGCATTGTGTCAATTCCGTCATCAAGGCTATCAACAGGCGCTACGTCGTGCTGGCATCACCATGAACCCGACTTACT
GCACTTTTGGCGATTTCACTTTTGAAGCCGGGGCGAAAGCGGTGCGTCAGCTCTTATCGTTACCGGAGCAGCCTACCGCG
ATTTTCTGCCACAATGACACGATGGCAATCGGTGCGATTCAGGAAGCGAAGCGACTTGGCTTGCGCGTACCGCAAGATCT
GTCGGTTGTCGGTTTTGATGATATTCAGTTTGCCCAGTACTGCGATCCGCCATTGACGACGATTTCTCAACCTCGCTATG
AAATTGGCCGCCAAGCCATGCTAATGATGTTAGAACTTCTGCGTGGACATGATGTGCGTGCTGGCTCGCGTCTCTTGGAG
ACCAAGTTGGTCGTACGTGAGAGTGCTGCACCACCCAACAAGAAATAG

Domains

Predicted by InterproScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(168-328)

Bacterial regulatory proteins, lacI family (LacI)

(3-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

98.806

100

0.988
  cytR Vibrio parahaemolyticus RIMD 2210633

90.419

99.701

0.901

Multiple sequence alignment