Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   H0A38_RS00210 Genome accession   NZ_CP059048
Coordinates   39697..40452 (+) Length   251 a.a.
NCBI ID   WP_003132217.1    Uniprot ID   Q9CJD9
Organism   Lactococcus lactis strain LAC460     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 34697..45452
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0A38_RS00180 (H0A38_00180) - 34890..35339 (+) 450 WP_047205962.1 GNAT family N-acetyltransferase -
  H0A38_RS00185 (H0A38_00185) - 35416..35658 (+) 243 WP_226319355.1 TM2 domain-containing protein -
  H0A38_RS00190 (H0A38_00190) - 35739..37361 (-) 1623 WP_058202944.1 SulP family inorganic anion transporter -
  H0A38_RS00195 (H0A38_00195) - 37571..38092 (+) 522 WP_033900573.1 GNAT family N-acetyltransferase -
  H0A38_RS00205 (H0A38_00205) - 38423..39598 (+) 1176 WP_129881236.1 pyridoxal phosphate-dependent aminotransferase -
  H0A38_RS00210 (H0A38_00210) recO 39697..40452 (+) 756 WP_003132217.1 DNA repair protein RecO Machinery gene
  H0A38_RS00215 (H0A38_00215) - 40566..41447 (+) 882 WP_058204250.1 Rgg/GadR/MutR family transcriptional regulator -
  H0A38_RS00220 (H0A38_00220) - 41676..42956 (+) 1281 WP_226319356.1 radical SAM/SPASM domain-containing protein -
  H0A38_RS00225 (H0A38_00225) - 42960..44522 (+) 1563 WP_129881238.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 251 a.a.        Molecular weight: 28703.89 Da        Isoelectric Point: 5.9537

>NTDB_id=408309 H0A38_RS00210 WP_003132217.1 39697..40452(+) (recO) [Lactococcus lactis strain LAC460]
MRDAETQGLVLYSRNYKEKDKLVKIFTESFGKRMFFVKNFGKSPYASSLQAFTDGKLTATINDGGFSFIEDVSEVVVYKN
ISSDIFINAHASYIISLADAAISDNQYDPGLYGFLKRSLELLDQGFDMEVVTNIFELQVLHRFGISLNFSECAFCHKTVG
PFDFSYKFSGCLCPQHFDEDLRRSHLDPNVIYLVNLFQEISLDELKKISIKADMKLKIRQFIDGLYDEYVGIHLKSKKFL
DGMSGWADIMK

Nucleotide


Download         Length: 756 bp        

>NTDB_id=408309 H0A38_RS00210 WP_003132217.1 39697..40452(+) (recO) [Lactococcus lactis strain LAC460]
ATGCGTGATGCCGAAACTCAAGGTCTAGTGCTTTACAGTCGTAATTACAAAGAAAAAGATAAATTGGTCAAGATTTTTAC
AGAGTCTTTTGGTAAACGGATGTTTTTTGTCAAAAATTTTGGAAAATCGCCTTATGCTAGTTCCTTACAAGCTTTTACTG
ATGGAAAATTGACGGCAACGATTAATGACGGGGGATTTTCTTTTATCGAGGATGTCAGTGAAGTGGTCGTTTATAAAAAT
ATTAGTTCAGATATTTTCATCAATGCTCATGCTTCTTATATCATAAGTTTGGCTGATGCGGCCATTTCTGATAATCAATA
CGACCCAGGGCTTTATGGATTTCTAAAGCGAAGTTTAGAGCTTTTAGATCAAGGATTTGATATGGAAGTCGTGACTAACA
TTTTTGAATTACAAGTTCTTCATCGTTTTGGGATTTCTTTGAACTTCTCAGAATGTGCATTTTGTCATAAAACCGTTGGA
CCCTTTGATTTTTCTTATAAATTTAGTGGCTGCCTTTGTCCCCAACATTTTGATGAAGATTTACGACGGAGTCATCTTGA
CCCAAATGTGATTTATTTGGTCAATCTTTTTCAAGAAATATCTTTAGATGAACTCAAAAAAATCTCGATAAAAGCAGATA
TGAAACTAAAAATTCGTCAATTTATTGATGGGCTTTATGATGAATATGTCGGAATTCATCTCAAATCCAAAAAATTCTTG
GACGGAATGTCTGGTTGGGCAGATATTATGAAATAA

Domains

Predicted by InterProScan.

Recombination protein O C terminal (RecO_C)

(83-237)

Recombination protein O N terminal (RecO_N)

(1-72)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9CJD9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

54.472

98.008

0.534

Multiple sequence alignment