Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   GPX95_RS05340 Genome accession   NZ_CP046817
Coordinates   1193879..1194889 (-) Length   336 a.a.
NCBI ID   WP_055029829.1    Uniprot ID   A0A0Q0W5U6
Organism   Vibrio metoecus strain 06-2478     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 1188879..1199889
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPX95_RS05330 cysM 1190056..1190943 (+) 888 WP_055032036.1 cysteine synthase CysM -
  GPX95_RS05335 mutS 1191212..1193800 (+) 2589 WP_055032040.1 DNA mismatch repair protein MutS -
  GPX95_RS05340 rpoS 1193879..1194889 (-) 1011 WP_055029829.1 RNA polymerase sigma factor RpoS Regulator
  GPX95_RS05345 nlpD 1194963..1195901 (-) 939 WP_055032037.1 murein hydrolase activator NlpD -
  GPX95_RS05350 - 1195901..1196527 (-) 627 WP_055032038.1 protein-L-isoaspartate(D-aspartate) O-methyltransferase -
  GPX95_RS05355 surE 1196520..1197272 (-) 753 WP_055029827.1 5'/3'-nucleotidase SurE -
  GPX95_RS05360 truD 1197274..1198359 (-) 1086 WP_055033968.1 tRNA pseudouridine(13) synthase TruD -
  GPX95_RS05365 ispF 1198389..1198865 (-) 477 WP_055029825.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  GPX95_RS05370 ispD 1198862..1199560 (-) 699 WP_055029824.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  GPX95_RS05375 ftsB 1199557..1199841 (-) 285 WP_055029823.1 cell division protein FtsB -

Sequence

Protein


Download         Length: 336 a.a.        Molecular weight: 38596.42 Da        Isoelectric Point: 4.3131

>NTDB_id=408306 GPX95_RS05340 WP_055029829.1 1193879..1194889(-) (rpoS) [Vibrio metoecus strain 06-2478]
MSVSNTVTKVEEFDFEDEALEVLEADDELSSDEELVAVEGASDDVREEFDASAKSLDATQMYLSEIGFSPLLTAEEEVLY
ARRALRGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALM
NQTRTIRLPIHVVKELNIYLRTARELSQRLDHEPTPEEIALELDRPVDDVTKMLRLNERISSVDTPIGGDGDKALLDILP
DSNNADPEFSTQDDDIRESLLNWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILVK
QGLNMEALFNVEYDVN

Nucleotide


Download         Length: 1011 bp        

>NTDB_id=408306 GPX95_RS05340 WP_055029829.1 1193879..1194889(-) (rpoS) [Vibrio metoecus strain 06-2478]
ATGAGTGTCAGCAATACTGTAACCAAAGTAGAAGAGTTCGATTTTGAAGATGAAGCACTGGAAGTGCTAGAAGCGGATGA
TGAACTCTCTAGTGATGAAGAATTAGTTGCTGTTGAAGGGGCAAGTGACGATGTTCGTGAGGAGTTTGATGCTTCTGCGA
AAAGTCTTGATGCCACCCAAATGTATCTCAGCGAGATTGGTTTTTCACCACTCCTTACCGCCGAAGAAGAAGTGCTTTAT
GCTCGCCGCGCTCTACGTGGTGACGAAGCAGCACGCAAACGCATGATTGAAAGTAACTTGCGTTTAGTAGTTAAAATTTC
ACGTCGCTACAGCAACCGTGGGTTAGCCCTGCTTGATCTGATTGAAGAAGGCAATCTCGGTTTGATTCGTGCGGTTGAGA
AATTCGATCCTGAACGTGGCTTCCGCTTCTCAACTTACGCCACATGGTGGATTCGTCAAACCATCGAACGTGCGCTGATG
AACCAAACCCGCACTATTCGTCTGCCTATCCATGTCGTCAAAGAGCTGAACATTTACCTGCGTACTGCGCGTGAATTGTC
CCAACGTCTTGACCACGAACCTACGCCAGAAGAAATTGCTCTTGAGCTGGATCGTCCCGTTGATGATGTGACCAAAATGT
TGCGACTCAACGAACGCATCAGCTCTGTGGATACACCAATTGGTGGCGATGGTGATAAAGCGTTGCTAGACATCTTGCCA
GATTCCAATAATGCGGATCCTGAGTTTTCCACTCAAGATGATGACATCCGTGAATCGCTGCTCAACTGGTTAGATGAACT
CAATCCAAAACAGAAAGAAGTGCTTGCTCGTCGTTTTGGTCTGTTGGGTTATGAGCCGTCCACCTTGGAAGAAGTAGGAC
GTGAGATCAATCTGACTCGTGAGCGTGTACGCCAAATTCAAGTGGAAGGGCTGCGTCGTTTGCGTGAGATTCTGGTCAAA
CAAGGTTTGAATATGGAAGCACTGTTTAACGTTGAATATGACGTCAATTAA

Domains

Predicted by InterproScan.

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(57-90)

Sigma-70 region 3 (Sigma70_r3)

(175-248)

Sigma-70 region 2 (Sigma70_r2)

(95-164)

Sigma-70, region 4 (Sigma70_r4)

(263-316)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0Q0W5U6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

98.503

99.405

0.979

Multiple sequence alignment