Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   GPX95_RS05195 Genome accession   NZ_CP046817
Coordinates   1166670..1167188 (-) Length   172 a.a.
NCBI ID   WP_055031748.1    Uniprot ID   A0A0Q0UJ75
Organism   Vibrio metoecus strain 06-2478     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1161670..1172188
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPX95_RS05170 rimM 1161765..1162319 (-) 555 WP_000061901.1 ribosome maturation factor RimM -
  GPX95_RS05175 rpsP 1162344..1162592 (-) 249 WP_000256449.1 30S ribosomal protein S16 -
  GPX95_RS05180 ffh 1162828..1164216 (-) 1389 WP_055031746.1 signal recognition particle protein -
  GPX95_RS05185 - 1164429..1165223 (+) 795 WP_055029845.1 inner membrane protein YpjD -
  GPX95_RS05190 - 1165306..1166586 (+) 1281 WP_055031747.1 HlyC/CorC family transporter -
  GPX95_RS05195 luxS 1166670..1167188 (-) 519 WP_055031748.1 S-ribosylhomocysteine lyase Regulator
  GPX95_RS05200 gshA 1167241..1168815 (-) 1575 WP_095468483.1 glutamate--cysteine ligase -
  GPX95_RS05205 - 1168927..1171782 (-) 2856 WP_055031749.1 pitrilysin family protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18931.78 Da        Isoelectric Point: 5.5455

>NTDB_id=408303 GPX95_RS05195 WP_055031748.1 1166670..1167188(-) (luxS) [Vibrio metoecus strain 06-2478]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTVPNKDILSERGIHTLEHLYAGFMRAHLNGGQVEIIDISP
MGCRTGFYMSLIGAPTEQQVAQAWLAAMQDVLKVESQDKIPELNEYQCGTAAMHSLEEAKGIAQKVIAAGISVNRNDELA
LPDAMLNELKVH

Nucleotide


Download         Length: 519 bp        

>NTDB_id=408303 GPX95_RS05195 WP_055031748.1 1166670..1167188(-) (luxS) [Vibrio metoecus strain 06-2478]
ATGCCATTACTAGACAGTTTTACGGTTGATCACACTCGGATGAATGCCCCGGCTGTGCGTGTTGCGAAAACCATGCAAAC
CCCAAAAGGGGATACGATTACCGTATTTGATTTGCGCTTTACTGTGCCAAACAAAGACATTCTGTCTGAGCGCGGTATTC
ATACCTTAGAGCATTTGTACGCGGGTTTTATGCGTGCTCATCTCAATGGTGGCCAAGTGGAAATCATTGATATCTCTCCG
ATGGGGTGTCGTACCGGTTTCTACATGAGCCTGATTGGGGCACCAACAGAGCAGCAAGTCGCGCAGGCTTGGCTAGCCGC
GATGCAAGATGTGTTAAAAGTGGAAAGCCAAGATAAAATTCCTGAGCTCAACGAATACCAATGCGGCACAGCCGCAATGC
ACTCGCTCGAAGAAGCCAAAGGCATTGCGCAGAAAGTGATTGCGGCGGGTATCTCGGTAAATCGCAACGATGAGCTGGCG
CTGCCTGACGCTATGCTTAATGAACTCAAGGTTCACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0Q0UJ75

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

94.186

100

0.942

Multiple sequence alignment