Detailed information NTG0408297

Bioinformatically predicted

Overview

• Name: sbcB
• Type: Machinery gene
• Locus tag: GPX95_RS02175
• Genome accession: NZ_CP046817
• Coordinates: 500508..501932 (+)
• Length: 474 a.a.
• NCBI ID: WP_158160011.1
• Uniprot ID: -
• Organism: Vibrio metoecus strain 06-2478
• Function: promote homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 495508..506932

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GPX95_RS02155	-	496001..496785 (-)	785	Protein_429	adenosylcobinamide-GDP ribazoletransferase	-
GPX95_RS02160	cobT	496785..497810 (-)	1026	WP_055030746.1	nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase	-
GPX95_RS02165	msrB	498243..498689 (-)	447	WP_055030745.1	peptide-methionine (R)-S-oxide reductase MsrB	-
GPX95_RS02170	-	498987..500360 (+)	1374	WP_055030744.1	L-cystine transporter	-
GPX95_RS02175	sbcB	500508..501932 (+)	1425	WP_158160011.1	exodeoxyribonuclease I	Machinery gene
GPX95_RS02180	-	501964..502338 (+)	375	WP_032469900.1	CidA/LrgA family protein	-
GPX95_RS02185	-	502329..503006 (+)	678	WP_055027176.1	LrgB family protein	-
GPX95_RS02190	cdd	503172..504059 (+)	888	WP_055030743.1	cytidine deaminase	-
GPX95_RS02195	-	504219..505094 (+)	876	WP_055030742.1	AEC family transporter	-
GPX95_RS02200	purT	505247..506422 (+)	1176	WP_000468090.1	phosphoribosylglycinamide formyltransferase 2	-

Sequence

Protein

• Length: 474 a.a.
• Molecular weight: 54645.22 Da
• Isoelectric Point: 6.2008

>NTDB_id=408297 GPX95_RS02175 WP_158160011.1 500508..501932(+) (sbcB) [Vibrio metoecus strain 06-2478]
MQQEHQPTFFFFDYETWGVNPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQLPNDYLPAPEAALITGITPQKANSLGLPEP
EFIARIHAELSTPKTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQHGNSRWDLLDVIRACHALRPEGMEWPENEDGFT
SFKLERLSVANGIEHSNAHDAMADVIATIELAKKIKAAQPKLFDYFFNMRHKRKLTELIDIVNQTPLMHVSGMLGRERHY
TSWIVPIAWHPTNQNAVIVVDLGKAPQPLLDLDAEALQARLYTRYEDLAPDELPIPVKLVHLNKCPILAPAKTLTAENAE
KIGIDREQCLAHLNVIRQHPEIREKLVSVFSQEREFAKENNVDSQLYDGFFSPADRAAMDIIRTTAPENLGNLDIKVADK
RIEPLLFRYRARHYPHTLTDAEQRRWAAHCREYFERNLESYMLNLENLVHEHQADPKKMAILKSVYHYVEKLAC

Nucleotide

• Length: 1425 bp

>NTDB_id=408297 GPX95_RS02175 WP_158160011.1 500508..501932(+) (sbcB) [Vibrio metoecus strain 06-2478]
ATGCAGCAAGAACACCAGCCCACTTTTTTCTTTTTCGACTACGAGACTTGGGGAGTCAATCCCGCCAAGGATCGTCCAAG
TCAGTTTGCGGGTGTTCGTACCGATATGGATTTCAACATTATTGGTGAGCCGCTGGTCATCTATTGCCAATTGCCAAATG
ATTATTTACCTGCGCCTGAAGCGGCACTGATCACCGGCATTACCCCACAAAAGGCGAATAGCCTCGGCTTACCAGAACCA
GAATTTATCGCCCGTATTCATGCCGAACTTTCCACTCCGAAGACCACCAGCCTAGGCTACAACAGCATTCGTTTTGATGA
TGAAGTAACGCGCTACACCTGTTATCGCAACTTTATCGACCCGTATGCCTGGAGCTGGCAACACGGCAATTCACGTTGGG
ATCTACTGGATGTGATCCGCGCTTGTCATGCTCTGCGCCCTGAAGGCATGGAATGGCCAGAGAATGAAGATGGTTTTACC
AGCTTCAAGCTAGAACGTCTTTCTGTTGCCAACGGCATTGAGCACAGCAACGCGCACGATGCCATGGCCGATGTGATTGC
CACGATTGAACTGGCGAAAAAAATCAAAGCAGCGCAACCGAAACTGTTTGATTACTTCTTCAACATGCGCCACAAACGCA
AGCTGACGGAGCTGATTGATATCGTGAACCAAACCCCATTGATGCATGTTTCTGGCATGCTGGGACGCGAACGTCACTAT
ACCAGTTGGATTGTGCCGATTGCTTGGCATCCGACCAACCAAAATGCGGTGATTGTGGTGGATTTGGGTAAAGCCCCTCA
GCCACTACTGGATCTGGATGCAGAAGCGTTGCAAGCGCGCCTCTATACACGCTATGAAGACTTAGCACCCGATGAACTGC
CGATTCCTGTGAAGTTAGTGCATCTCAACAAATGCCCAATTCTGGCTCCGGCCAAAACCTTAACCGCAGAGAATGCCGAA
AAGATTGGTATTGATCGCGAGCAGTGTCTTGCGCATTTGAATGTGATTCGCCAACATCCAGAAATTCGTGAAAAGCTTGT
CTCAGTGTTCAGTCAAGAACGTGAGTTTGCCAAGGAAAACAATGTAGATAGCCAATTGTATGATGGTTTTTTCTCTCCTG
CCGATCGCGCAGCGATGGATATCATTCGAACCACTGCTCCGGAAAACCTCGGAAACCTTGACATAAAAGTGGCAGATAAA
CGGATTGAACCACTTCTCTTTCGCTACCGCGCACGCCATTATCCACATACCTTAACCGATGCCGAACAACGGCGTTGGGC
GGCGCATTGTCGTGAGTATTTCGAGCGCAATCTGGAAAGCTATATGTTGAATTTGGAAAATCTGGTGCATGAACATCAAG
CTGATCCAAAGAAAATGGCGATTTTAAAATCCGTCTACCATTACGTGGAAAAACTCGCTTGCTAA

Domains

Predicted by InterproScan.

• Exonuclease C-terminal (Exonuc_X-T_C) (210-470)

• Exonuclease (RNase_T) (11-191)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
sbcB	Vibrio cholerae O1 biovar El Tor strain E7946	93.882	100	0.939