Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   GPX87_RS08755 Genome accession   NZ_CP046815
Coordinates   1849649..1850167 (+) Length   172 a.a.
NCBI ID   WP_078925559.1    Uniprot ID   -
Organism   Vibrio cincinnatiensis strain 1398-82     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1844649..1855167
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPX87_RS08745 - 1844894..1847746 (+) 2853 WP_078925557.1 pitrilysin family protein -
  GPX87_RS08750 gshA 1847967..1849535 (+) 1569 WP_078925558.1 glutamate--cysteine ligase -
  GPX87_RS08755 luxS 1849649..1850167 (+) 519 WP_078925559.1 S-ribosylhomocysteine lyase Regulator
  GPX87_RS08760 - 1850228..1851505 (-) 1278 WP_078925560.1 CNNM domain-containing protein -
  GPX87_RS08765 - 1851554..1852348 (-) 795 WP_078925561.1 inner membrane protein YpjD -
  GPX87_RS08770 ffh 1852560..1853936 (+) 1377 WP_078925562.1 signal recognition particle protein -
  GPX87_RS08775 rpsP 1854192..1854440 (+) 249 WP_078925563.1 30S ribosomal protein S16 -
  GPX87_RS08780 rimM 1854459..1855013 (+) 555 WP_078925564.1 ribosome maturation factor RimM -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19094.99 Da        Isoelectric Point: 5.2188

>NTDB_id=408282 GPX87_RS08755 WP_078925559.1 1849649..1850167(+) (luxS) [Vibrio cincinnatiensis strain 1398-82]
MPLLDSFTVDHTRMQAPAVRVAKTMQTPKGDTITVFDLRFTLPNKAILSEKGIHTLEHLYAGFMRDHLNSDIVEIIDISP
MGCRTGFYMSLIGTPSEEQVAHAWLAAMNDVLKVESQDKIPELNEYQCGTAAMHSLSEAKVIAQQVIQSGIRVNKNDELA
LPEAMLQSLKVD

Nucleotide


Download         Length: 519 bp        

>NTDB_id=408282 GPX87_RS08755 WP_078925559.1 1849649..1850167(+) (luxS) [Vibrio cincinnatiensis strain 1398-82]
ATGCCATTACTAGACAGTTTTACGGTTGACCATACTCGTATGCAGGCTCCTGCAGTGCGAGTAGCTAAGACAATGCAAAC
CCCCAAAGGTGATACGATTACGGTGTTTGATTTACGTTTTACGTTACCCAATAAAGCGATTTTATCTGAAAAAGGGATTC
ACACGCTGGAGCATTTATATGCCGGATTCATGCGCGACCACCTCAATAGCGATATTGTAGAAATTATTGATATTTCTCCA
ATGGGGTGCCGAACGGGTTTTTATATGAGCTTAATTGGTACACCGAGTGAAGAGCAGGTTGCCCATGCCTGGCTCGCCGC
AATGAATGATGTGCTTAAGGTGGAAAGCCAAGATAAGATTCCTGAGTTAAATGAGTACCAATGTGGCACGGCCGCTATGC
ATTCTTTATCGGAAGCAAAAGTGATCGCCCAACAAGTTATTCAGTCTGGAATTCGAGTGAATAAAAATGACGAGTTGGCT
CTACCTGAAGCTATGCTTCAGTCATTAAAAGTCGATTGA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

84.795

99.419

0.843

Multiple sequence alignment