Detailed information NTG0408279

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: GPX87_RS08615
• Genome accession: NZ_CP046815
• Coordinates: 1822961..1823950 (+)
• Length: 329 a.a.
• NCBI ID: WP_078927351.1
• Uniprot ID: A0A1T4S5F3
• Organism: Vibrio cincinnatiensis strain 1398-82
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1817961..1828950

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GPX87_RS08580	ftsB	1818019..1818300 (+)	282	WP_078927364.1	cell division protein FtsB	-
GPX87_RS08585	ispD	1818300..1819001 (+)	702	WP_078927345.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
GPX87_RS08590	ispF	1818998..1819477 (+)	480	WP_078927346.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
GPX87_RS08595	truD	1819522..1820568 (+)	1047	WP_078927347.1	tRNA pseudouridine(13) synthase TruD	-
GPX87_RS08600	surE	1820561..1821316 (+)	756	WP_078927348.1	5'/3'-nucleotidase SurE	-
GPX87_RS08605	-	1821321..1821947 (+)	627	WP_078927349.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
GPX87_RS08610	nlpD	1821959..1822894 (+)	936	WP_172459903.1	murein hydrolase activator NlpD	-
GPX87_RS08615	rpoS	1822961..1823950 (+)	990	WP_078927351.1	RNA polymerase sigma factor RpoS	Regulator
GPX87_RS08620	mutS	1824014..1826596 (-)	2583	WP_078927352.1	DNA mismatch repair protein MutS	-
GPX87_RS08625	cysM	1826820..1827710 (-)	891	WP_078927353.1	cysteine synthase CysM	-
GPX87_RS08630	cysP	1827926..1828927 (+)	1002	WP_078927354.1	thiosulfate ABC transporter substrate-binding protein CysP	-

Sequence

Protein

• Length: 329 a.a.
• Molecular weight: 37758.63 Da
• Isoelectric Point: 4.5495

>NTDB_id=408279 GPX87_RS08615 WP_078927351.1 1822961..1823950(+) (rpoS) [Vibrio cincinnatiensis strain 1398-82]
MSISNTTVTKVEDFDFDPEVFNALESDSVIEQPPTHTNLREEYDASSKSLDATQMYLSEIGFSPLLTAEEEVLYARRALR
GDDAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTI
RLPIHVVKELNIYLRTARELSQRLDHEPTAEEIAAELDKPVDDVNKMLRLNERISSVDTPIGGDGDKALLDILPDANNSD
PEFSIQDDDIRDSLVNWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREISLTRERVRQIQVEGLRRLREILLKQGLNME
ALFTIENDG

Nucleotide

• Length: 990 bp

>NTDB_id=408279 GPX87_RS08615 WP_078927351.1 1822961..1823950(+) (rpoS) [Vibrio cincinnatiensis strain 1398-82]
ATGAGTATCAGCAATACAACAGTAACTAAAGTCGAAGATTTTGATTTTGACCCCGAGGTTTTCAATGCTCTAGAGTCTGA
CTCTGTGATTGAACAACCACCTACCCACACTAACCTCCGAGAAGAGTATGACGCATCAAGCAAAAGCTTAGATGCAACAC
AAATGTACCTAAGTGAAATCGGTTTTTCGCCTTTGCTGACGGCTGAAGAAGAAGTTCTCTACGCACGGCGAGCATTGCGG
GGCGATGATGCCGCTCGTAAACGTATGATTGAAAGTAACCTACGGTTAGTGGTGAAAATTTCCCGCCGATACAGTAACCG
AGGGCTCGCTTTATTGGATTTAATTGAAGAAGGTAACTTAGGGTTAATCCGAGCGGTAGAAAAATTTGATCCAGAACGTG
GTTTTCGTTTTTCAACCTATGCGACTTGGTGGATTCGGCAAACGATAGAACGTGCATTGATGAACCAAACTCGTACGATC
CGTCTACCCATTCATGTGGTTAAAGAGCTGAATATTTACTTACGTACAGCGCGTGAACTTTCCCAACGATTGGATCATGA
ACCGACCGCAGAAGAAATTGCGGCAGAACTGGATAAACCCGTGGATGATGTCAATAAAATGCTGCGCTTAAATGAACGTA
TTAGTTCGGTAGACACCCCCATTGGTGGGGATGGAGACAAAGCGTTGCTGGATATTTTACCGGATGCAAATAATTCTGAT
CCTGAATTTTCGATACAAGATGATGATATTAGAGATTCGCTGGTTAACTGGCTAGATGAACTTAATCCGAAACAAAAAGA
GGTGCTTGCGCGGCGTTTCGGTTTACTGGGCTATGAACCATCAACTCTTGAAGAAGTTGGGAGAGAAATAAGCCTAACTC
GTGAGCGAGTGAGGCAGATCCAAGTTGAGGGGCTGCGCCGTTTACGCGAAATCTTACTCAAACAAGGGTTGAATATGGAA
GCTTTGTTTACTATTGAGAATGATGGATAA

Domains

Predicted by InterproScan.

• Sigma-70 region 3 (Sigma70_r3) (169-242)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (51-84)

• Sigma-70 region 2 (Sigma70_r2) (89-158)

• Sigma-70, region 4 (Sigma70_r4) (257-310)

3D structure

• AlphaFold DB: A0A1T4S5F3

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	85.97	100	0.875