Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   GPX87_RS05140 Genome accession   NZ_CP046815
Coordinates   1086095..1087102 (-) Length   335 a.a.
NCBI ID   WP_078927109.1    Uniprot ID   A0A1T4RQP9
Organism   Vibrio cincinnatiensis strain 1398-82     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1081095..1092102
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPX87_RS05115 rraA 1081666..1082181 (-) 516 WP_078927104.1 ribonuclease E activity regulator RraA -
  GPX87_RS05120 - 1082257..1083174 (-) 918 WP_078927105.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -
  GPX87_RS05125 hslU 1083264..1084595 (-) 1332 WP_078927106.1 HslU--HslV peptidase ATPase subunit -
  GPX87_RS05130 hslV 1084634..1085188 (-) 555 WP_078927107.1 ATP-dependent protease subunit HslV -
  GPX87_RS05135 - 1085427..1085969 (-) 543 WP_078927108.1 SPOR domain-containing protein -
  GPX87_RS05140 cytR 1086095..1087102 (-) 1008 WP_078927109.1 DNA-binding transcriptional regulator CytR Regulator
  GPX87_RS05145 priA 1087391..1089592 (-) 2202 WP_078927110.1 primosomal protein N' -
  GPX87_RS05150 rpmE 1089836..1090054 (+) 219 WP_078927111.1 50S ribosomal protein L31 -
  GPX87_RS05155 - 1090309..1091586 (+) 1278 WP_078927112.1 malic enzyme-like NAD(P)-binding protein -
  GPX87_RS05160 metJ 1091649..1091966 (-) 318 WP_078927113.1 met regulon transcriptional regulator MetJ -

Sequence

Protein


Download         Length: 335 a.a.        Molecular weight: 36934.43 Da        Isoelectric Point: 6.3893

>NTDB_id=408266 GPX87_RS05140 WP_078927109.1 1086095..1087102(-) (cytR) [Vibrio cincinnatiensis strain 1398-82]
MATMKDVAQLAGVSTATVSRALMNPEKVSTSTRKRVEEAVLEAGYSPNSLARNLRRNESKTIVAIVPDICDPYYTEIIRG
IEDAAMEHGYLVLLGDSGQQRKRESSFVNLVFTKQADGMLLLGADLPFDVSKSEQKNLPPMVMACEYAPELELPTVHIDN
LTSAFEAVNYLTQMGHKRIAQISGPEGAVLCEFRQQGYQQALRRAGLTKNPSYHVVGDFTFDSGAKAVRQLLALSEPPTA
IFCHNDAMAIGAMQEAKRLGLRVPQDLSVVGFDDIQFAQYCDPPLTTISQPRYEIGRQAMLMMLELLRGHDVRAGSRLLE
THLVVRESAAPPRIL

Nucleotide


Download         Length: 1008 bp        

>NTDB_id=408266 GPX87_RS05140 WP_078927109.1 1086095..1087102(-) (cytR) [Vibrio cincinnatiensis strain 1398-82]
ATGGCGACAATGAAGGATGTTGCCCAGCTTGCTGGTGTCTCTACCGCTACGGTATCTCGAGCGTTGATGAACCCAGAAAA
AGTCTCCACATCAACTCGTAAACGAGTGGAAGAGGCGGTTTTGGAAGCTGGCTATTCCCCTAATTCTTTAGCGCGTAATT
TGCGACGTAATGAATCCAAAACCATTGTGGCAATTGTTCCTGATATTTGCGATCCGTATTATACCGAGATCATCCGTGGC
ATTGAAGATGCCGCGATGGAACATGGTTACCTCGTATTATTGGGAGATAGTGGCCAACAGCGAAAAAGAGAAAGTTCCTT
TGTCAATTTGGTGTTCACCAAACAAGCGGACGGGATGTTATTGCTGGGGGCTGACTTACCTTTTGATGTCAGTAAATCAG
AACAAAAAAATCTGCCCCCCATGGTGATGGCATGTGAGTATGCTCCTGAACTTGAATTGCCGACGGTGCATATTGATAAC
CTGACCTCTGCGTTTGAAGCGGTTAACTATTTAACTCAAATGGGCCATAAACGTATCGCTCAGATCAGTGGTCCAGAAGG
GGCTGTTTTGTGTGAATTTCGTCAGCAAGGATATCAGCAGGCGTTACGTCGAGCTGGTTTGACAAAAAATCCTAGTTACC
ATGTGGTGGGGGATTTTACCTTTGATTCTGGTGCTAAAGCCGTTCGTCAGCTATTGGCTTTATCTGAGCCGCCGACCGCA
ATTTTCTGTCATAACGATGCAATGGCCATTGGTGCCATGCAAGAAGCCAAACGATTGGGGTTACGTGTTCCACAAGATTT
ATCGGTAGTGGGATTTGATGACATTCAGTTTGCCCAATATTGCGATCCACCGCTAACCACCATTTCACAGCCTCGTTATG
AGATTGGCCGTCAAGCCATGTTAATGATGTTAGAACTACTGCGTGGGCATGATGTGAGAGCAGGTTCTCGCTTGTTGGAA
ACGCATTTAGTTGTGAGAGAAAGTGCGGCACCACCAAGAATCTTATAG

Domains

Predicted by InterproScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(168-328)

Bacterial regulatory proteins, lacI family (LacI)

(3-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1T4RQP9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

91.566

99.104

0.907
  cytR Vibrio parahaemolyticus RIMD 2210633

89.189

99.403

0.887

Multiple sequence alignment