Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   GPX87_RS00595 Genome accession   NZ_CP046815
Coordinates   120924..122345 (+) Length   473 a.a.
NCBI ID   WP_078924770.1    Uniprot ID   A0A1T4KWV9
Organism   Vibrio cincinnatiensis strain 1398-82     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 115924..127345
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPX87_RS00570 cobU 115958..116506 (-) 549 WP_078924765.1 bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase -
  GPX87_RS00575 - 116491..117303 (-) 813 WP_078924766.1 adenosylcobinamide-GDP ribazoletransferase -
  GPX87_RS00580 cobT 117303..118379 (-) 1077 WP_078924767.1 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase -
  GPX87_RS00585 - 118540..119229 (+) 690 WP_078924768.1 NAD(P)H-binding protein -
  GPX87_RS00590 - 119396..120766 (+) 1371 WP_078924769.1 L-cystine transporter -
  GPX87_RS00595 sbcB 120924..122345 (+) 1422 WP_078924770.1 exodeoxyribonuclease I Machinery gene
  GPX87_RS00600 - 122376..122759 (+) 384 WP_115173989.1 CidA/LrgA family protein -
  GPX87_RS00605 - 122759..123439 (+) 681 WP_078924771.1 LrgB family protein -
  GPX87_RS00610 cdd 123598..124485 (+) 888 WP_078924772.1 cytidine deaminase -
  GPX87_RS00615 - 124570..127269 (-) 2700 WP_115173988.1 EAL domain-containing protein -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 54435.14 Da        Isoelectric Point: 5.4541

>NTDB_id=408253 GPX87_RS00595 WP_078924770.1 120924..122345(+) (sbcB) [Vibrio cincinnatiensis strain 1398-82]
MQQHQPTFFFFDYETWGTNPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQLPCDYLPGPEAALITKITPQKVMEEGLPEPE
FIARIHAELATPNTTSLGYNSIRFDDEVTRYTCYRNFLDPYAWSWQNGNSRWDLLDVMRACHALRPEGIHWPENNDGFTS
FKLEDLSKRNGIEHENAHDAMADVIATIELAKKIKAAQPKLFDYFLSMRHKRKLIDLVDIVNMTPLMHVSGMLGRECQYT
SWVVPVAWHPTNQNAVIVVDLAKDPEPLLTLSAEQLHQRLYTKREELAEDELPVPIKLVHLNKCPILAPAKTLTADNAAV
IGIDREQCLANLALLRQHPEIREKLVALFAIEREFPATADVDSQLYDGFFSPSDKAGMEIIRSSHPELLGSLDIQFSDPR
IAPLLFRYRARHYPWTLNDTEQRRWANHCRDYFETCLPSYMLNLENLVQEHQSDEKKMAILKSVYRYVESLAC

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=408253 GPX87_RS00595 WP_078924770.1 120924..122345(+) (sbcB) [Vibrio cincinnatiensis strain 1398-82]
ATGCAACAGCACCAGCCAACTTTCTTCTTTTTCGATTATGAGACGTGGGGAACGAATCCAGCGAAAGATCGACCCAGCCA
GTTTGCCGGTGTCCGTACTGATATGGATTTCAATATTATCGGTGAGCCGTTAGTGATTTACTGTCAATTACCTTGTGATT
ATCTACCGGGGCCGGAGGCTGCGTTAATCACCAAAATTACACCACAAAAGGTAATGGAGGAAGGGCTACCTGAGCCTGAA
TTTATTGCTCGAATTCACGCAGAACTCGCCACCCCCAATACAACTAGCCTAGGTTATAACAGCATTCGTTTTGATGATGA
GGTGACGCGCTATACCTGTTATCGCAACTTTCTTGACCCTTATGCGTGGAGTTGGCAAAACGGTAACTCTCGCTGGGATC
TATTAGATGTAATGCGGGCCTGCCACGCACTACGTCCGGAAGGGATCCACTGGCCAGAAAATAACGATGGGTTTACCAGC
TTTAAATTAGAAGACCTATCAAAAAGAAACGGCATTGAACATGAAAATGCCCACGATGCAATGGCCGATGTCATCGCTAC
TATTGAACTTGCAAAAAAAATCAAAGCCGCCCAACCTAAGCTTTTCGATTATTTTTTATCAATGCGCCATAAACGCAAGC
TGATCGACCTGGTCGATATTGTCAATATGACACCGTTAATGCATGTTTCTGGCATGTTGGGTCGAGAATGCCAATACACC
AGTTGGGTTGTTCCAGTGGCGTGGCATCCTACCAACCAGAATGCTGTTATTGTGGTCGATTTAGCCAAAGATCCTGAGCC
GTTGTTAACGCTCTCTGCCGAGCAGTTGCATCAACGTCTTTACACCAAACGTGAGGAATTGGCTGAAGATGAATTACCAG
TGCCCATCAAATTGGTACATCTCAATAAGTGTCCGATTTTAGCGCCTGCAAAAACCTTAACCGCAGACAATGCCGCCGTG
ATCGGGATTGACCGTGAACAATGCTTAGCGAATCTCGCCTTACTTCGTCAGCATCCAGAAATTCGAGAAAAATTAGTTGC
CCTATTTGCGATTGAACGAGAGTTTCCCGCCACAGCTGATGTCGATAGCCAACTGTATGATGGATTCTTTTCCCCGTCCG
ACAAAGCCGGTATGGAAATTATACGCTCAAGCCATCCTGAATTACTCGGCAGCTTAGATATTCAATTTAGTGACCCAAGA
ATAGCTCCACTGCTCTTTCGATATCGCGCTCGTCATTATCCTTGGACACTGAATGACACAGAGCAACGTCGCTGGGCTAA
TCACTGTCGAGATTATTTTGAAACATGCCTACCCAGCTATATGCTTAATTTAGAAAACTTAGTGCAAGAGCACCAAAGTG
ATGAGAAAAAAATGGCCATACTCAAATCTGTTTATCGCTATGTAGAATCTTTAGCTTGCTAG

Domains

Predicted by InterproScan.

Exonuclease (RNase_T)

(10-190)

Exonuclease C-terminal (Exonuc_X-T_C)

(209-469)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1T4KWV9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

81.78

99.789

0.816

Multiple sequence alignment