Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   SSUD12_RS00210 Genome accession   NC_017621
Coordinates   28527..29309 (+) Length   260 a.a.
NCBI ID   WP_014637252.1    Uniprot ID   -
Organism   Streptococcus suis D12     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 23527..34309
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSUD12_RS00190 (SSUD12_0020) mreD 24375..24863 (+) 489 WP_014637249.1 rod shape-determining protein MreD -
  SSUD12_RS00195 (SSUD12_0021) pcsB 24948..26204 (+) 1257 WP_014637250.1 peptidoglycan hydrolase PcsB -
  SSUD12_RS00200 (SSUD12_0022) - 26307..27275 (+) 969 WP_002935337.1 ribose-phosphate diphosphokinase -
  SSUD12_RS00205 (SSUD12_0023) - 27362..28540 (+) 1179 WP_014637251.1 pyridoxal phosphate-dependent aminotransferase -
  SSUD12_RS00210 (SSUD12_0024) recO 28527..29309 (+) 783 WP_014637252.1 DNA repair protein RecO Machinery gene
  SSUD12_RS00215 (SSUD12_0025) plsX 29306..30313 (+) 1008 WP_014637253.1 phosphate acyltransferase PlsX -
  SSUD12_RS00220 (SSUD12_0026) - 30306..30554 (+) 249 WP_014637254.1 phosphopantetheine-binding protein -
  SSUD12_RS00225 (SSUD12_0027) purC 30672..31379 (+) 708 WP_014637255.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -

Sequence

Protein


Download         Length: 260 a.a.        Molecular weight: 30452.95 Da        Isoelectric Point: 5.4193

>NTDB_id=40825 SSUD12_RS00210 WP_014637252.1 28527..29309(+) (recO) [Streptococcus suis D12]
MERIETRGLVLYNRNFREDDKLVKIFTEKAGKRMFFVKHASKSKLVASIQPLTYADFIVKINDDGLSYIEDFHQVQPFKN
INGDIFKLSYATYILALADAALQDKVYDPALFAFLVKTLDLMESGLDYEVLTNIFEIQLLGRFGISLNFHECAFCHRVGL
PFDYSYKYSGVLCPQHYQQDERRAYLDPNVPYLLDQFQAISFDELETISIKPEMKRKLRLFIDQLYEEYVGIHLKSKKFI
DDLSSWGQIMKPRTENEETE

Nucleotide


Download         Length: 783 bp        

>NTDB_id=40825 SSUD12_RS00210 WP_014637252.1 28527..29309(+) (recO) [Streptococcus suis D12]
ATGGAACGAATTGAAACCAGGGGATTAGTCCTATATAATCGGAATTTTCGAGAAGATGACAAGCTGGTCAAGATTTTTAC
GGAGAAGGCTGGCAAGCGAATGTTTTTCGTGAAACATGCCTCTAAGTCCAAGCTGGTAGCTTCTATCCAGCCTTTGACTT
ATGCGGATTTTATCGTTAAAATCAATGATGATGGTCTGTCTTATATCGAAGATTTTCATCAGGTACAGCCCTTTAAGAAT
ATTAACGGTGATATTTTCAAGCTTAGCTATGCTACCTACATCTTAGCCTTGGCAGATGCGGCCTTGCAGGACAAGGTCTA
TGACCCAGCTCTCTTTGCTTTTTTGGTCAAGACCTTGGACTTGATGGAGTCAGGTTTGGACTACGAAGTTCTGACCAATA
TCTTTGAAATTCAGCTCTTGGGTCGATTTGGGATTAGTCTGAATTTTCACGAGTGTGCTTTTTGTCATCGGGTTGGCTTG
CCTTTTGACTATTCCTACAAGTACAGCGGTGTCTTGTGTCCGCAACACTATCAACAAGATGAGCGACGGGCTTATCTGGA
TCCCAATGTTCCCTATCTACTTGATCAATTTCAGGCCATTTCCTTTGATGAGCTGGAAACCATTTCCATCAAGCCTGAGA
TGAAGCGAAAATTACGGCTTTTTATTGACCAGCTGTACGAGGAATATGTGGGGATTCACTTGAAATCTAAGAAATTTATA
GATGATTTGTCTTCTTGGGGGCAGATTATGAAACCAAGAACAGAAAATGAGGAAACAGAATGA

Domains

Predicted by InterProScan.

Recombination protein O C terminal (RecO_C)

(84-237)

Recombination protein O N terminal (RecO_N)

(1-78)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

69.721

96.538

0.673

Multiple sequence alignment