Detailed information NTG0408242

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: GPY28_RS23690
• Genome accession: NZ_CP046814
• Coordinates: 3094048..3095034 (-)
• Length: 328 a.a.
• NCBI ID: WP_005380887.1
• Uniprot ID: A0A2I3CB39
• Organism: Vibrio alginolyticus strain 2010V-1102
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3089048..3100034

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GPY28_RS23675	recA	3089593..3090636 (-)	1044	WP_005380874.1	recombinase RecA	Machinery gene
GPY28_RS23680	pncC	3090837..3091319 (-)	483	WP_005383794.1	nicotinamide-nucleotide amidase	-
GPY28_RS23685	mutS	3091404..3093965 (+)	2562	WP_033907432.1	DNA mismatch repair protein MutS	-
GPY28_RS23690	rpoS	3094048..3095034 (-)	987	WP_005380887.1	RNA polymerase sigma factor RpoS	Regulator
GPY28_RS23695	-	3095115..3096038 (-)	924	WP_017633546.1	peptidoglycan DD-metalloendopeptidase family protein	-
GPY28_RS23700	-	3096052..3096678 (-)	627	WP_005380892.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
GPY28_RS23705	surE	3096678..3097454 (-)	777	WP_005380894.1	5'/3'-nucleotidase SurE	-
GPY28_RS23710	truD	3097454..3098497 (-)	1044	WP_053350720.1	tRNA pseudouridine(13) synthase TruD	-
GPY28_RS23715	ispF	3098543..3099019 (-)	477	WP_005380896.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
GPY28_RS23720	ispD	3099034..3099741 (-)	708	WP_017821625.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
GPY28_RS23725	ftsB	3099743..3100024 (-)	282	WP_005380907.1	cell division protein FtsB	-

Sequence

Protein

• Length: 328 a.a.
• Molecular weight: 37412.31 Da
• Isoelectric Point: 4.7299

>NTDB_id=408242 GPY28_RS23690 WP_005380887.1 3094048..3095034(-) (rpoS) [Vibrio alginolyticus strain 2010V-1102]
MSISNTVTKVEEFAFDNASVKTIDNELERSSSTESKATAREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRALR
GDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTI
RLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNSD
PEVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREVLIKQGLNME
NLFNVEDD

Nucleotide

• Length: 987 bp

>NTDB_id=408242 GPY28_RS23690 WP_005380887.1 3094048..3095034(-) (rpoS) [Vibrio alginolyticus strain 2010V-1102]
ATGAGTATCAGCAACACAGTAACCAAAGTTGAAGAGTTTGCATTTGATAATGCGTCAGTGAAGACCATTGATAACGAACT
CGAAAGATCATCATCCACAGAAAGCAAAGCGACTGCGCGTGAAGAATTTGACGCGAGCAGTAAAAGCTTAGATGCAACTC
AGTTGTATTTGGGCGAAATTGGCTTCTCACCTTTACTTACTGCCGAAGAAGAAGTGCTTTACGCAAGACGCGCCCTACGT
GGCGACGAAGCGGCACGCAAACGTATGATCGAAAGTAACCTACGTTTGGTTGTTAAGATTTCTCGTCGATACAGTAACCG
TGGTCTAGCACTACTCGATCTGATTGAAGAAGGTAACCTCGGCTTGATCCGAGCGGTCGAAAAATTCGACCCAGAACGTG
GTTTCCGTTTCTCTACTTACGCAACATGGTGGATCCGACAAACGATAGAGCGAGCGTTGATGAACCAAACTCGCACGATC
CGTCTACCTATCCACGTAGTGAAAGAGCTGAACATTTATCTGCGTACTGCGCGTGAACTTTCTCAAAAGCTCGATCACGA
ACCGACCGCAGAAGAAATTGCTGCTCAATTAGATATTCCAGTCGAAGACGTAAGCAAAATGTTACGCCTTAATGAGCGTA
TTAGCTCTGTCGACACGCCAATCGGTGGTGACGGTGAGAAAGCGCTGCTGGATATTATTCCTGATGCAAACAACTCTGAT
CCAGAAGTTTCGACTCAAGATGACGACATCAAATCATCGTTGATTCATTGGTTAGAAGAGTTGAATCCGAAACAGAAAGA
AGTGCTTGCACGTCGCTTCGGCCTACTAGGCTACGAGCCTTCGACGCTGGAAGAAGTTGGTCGAGAGATTGGTCTGACAC
GTGAGCGAGTACGTCAAATACAAGTGGAAGGTTTACGTCGTCTTCGTGAAGTCCTAATCAAACAAGGTTTGAATATGGAA
AACTTATTTAACGTAGAAGACGATTAA

Domains

Predicted by InterproScan.

• Sigma-70 region 3 (Sigma70_r3) (169-242)

• Sigma-70 region 2 (Sigma70_r2) (89-158)

• Sigma-70, region 4 (Sigma70_r4) (257-310)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (51-84)

3D structure

• AlphaFold DB: A0A2I3CB39

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.832	100	0.854